JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TTI1_chr20_37978021_38038456	0/0	a0004	1089	2	0	0	2	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	a0005	1089	1	0	1	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	a0006	1089	1	1	0	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	a0007	1089	1	1	0	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	a0008	1089	1	1	0	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	a0009	1089	1	0	0	0	0	1	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	a0010	948	1	0	0	1	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	a0011	1089	1	0	0	1	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	a0012	1089	1	1	0	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	a0013	1089	1	0	0	0	0	1	copy fasta	TTI1	chr20	37978021	38038456
TTI2_chr8_33493722_33518135	0/1	a0001	508	215	37	29	113	6	29	copy fasta	TTI2	chr8	33493722	33518135
TTI2_chr8_33493722_33518135	1/0	a0002	508	173	48	28	72	5	19	copy fasta	TTI2	chr8	33493722	33518135
TTI2_chr8_33493722_33518135	0/0	a0003	508	5	5	0	0	0	0	copy fasta	TTI2	chr8	33493722	33518135
TTI2_chr8_33493722_33518135	0/0	a0004	508	1	0	1	0	0	0	copy fasta	TTI2	chr8	33493722	33518135
TTI2_chr8_33493722_33518135	0/0	a0005	508	1	0	1	0	0	0	copy fasta	TTI2	chr8	33493722	33518135
TTI2_chr8_33493722_33518135	0/0	a0006	508	1	0	0	1	0	0	copy fasta	TTI2	chr8	33493722	33518135
TTI2_chr8_33493722_33518135	0/0	a0007	508	1	0	0	0	1	0	copy fasta	TTI2	chr8	33493722	33518135
TTI2_chr8_33493722_33518135	0/0	a0008	508	1	0	1	0	0	0	copy fasta	TTI2	chr8	33493722	33518135
TTK_chr6_79999649_80047527	1/1	a0001	857	319	86	49	128	10	44	copy fasta	TTK	chr6	79999649	80047527
TTK_chr6_79999649_80047527	0/0	a0002	857	3	0	3	0	0	0	copy fasta	TTK	chr6	79999649	80047527
TTK_chr6_79999649_80047527	0/0	a0003	857	2	0	0	2	0	0	copy fasta	TTK	chr6	79999649	80047527
TTK_chr6_79999649_80047527	0/0	a0004	857	2	0	0	2	0	0	copy fasta	TTK	chr6	79999649	80047527
TTK_chr6_79999649_80047527	0/0	a0005	857	1	1	0	0	0	0	copy fasta	TTK	chr6	79999649	80047527
TTK_chr6_79999649_80047527	0/0	a0006	857	1	1	0	0	0	0	copy fasta	TTK	chr6	79999649	80047527
TTLL10_chr1_1168880_1202936	1/0	a0001	673	122	24	37	32	12	16	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0002	673	104	0	22	71	0	11	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0003	673	34	18	2	2	1	11	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0004	673	22	4	0	17	1	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0005	673	18	11	0	6	0	1	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0006	673	13	4	3	4	0	2	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0007	673	11	2	0	7	0	2	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0008	673	9	9	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0009	673	5	0	0	3	0	2	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0010	673	5	4	1	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0011	673	5	0	0	5	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0012	673	4	4	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0013	673	3	0	0	3	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0014	673	3	3	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0015	673	2	1	1	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/1	a0016	673	2	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0017	673	1	0	0	1	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0018	673	1	0	1	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0019	673	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0020	199	1	0	0	0	1	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0021	673	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0022	673	1	0	0	1	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0023	673	1	0	0	0	0	1	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0024	673	1	0	0	1	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0025	673	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0026	673	1	0	0	0	1	0	copy fasta	TTLL10	chr1	1168880	1202936