JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TTLL10_chr1_1168880_1202936	0/0	a0027	673	1	0	0	1	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0028	673	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0029	673	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0030	673	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0031	673	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0032	673	1	0	0	1	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0033	673	1	0	1	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0034	673	1	0	0	1	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0035	673	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	a0036	673	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL11_chr9_121810674_122098308	1/1	a0001	710	98	35	20	16	8	17	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	a0002	712	22	8	5	1	2	6	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	a0003	710	20	18	2	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	a0004	710	17	14	2	1	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	a0005	710	11	0	10	1	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	a0006	710	1	0	0	1	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	a0007	710	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	a0008	710	1	0	0	0	0	1	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	a0009	710	1	0	1	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	a0010	710	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	a0011	710	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL12_chr22_43161622_43192134	1/0	a0001	644	288	72	56	119	13	27	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/1	a0002	644	73	5	12	36	3	16	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	a0003	644	9	4	2	0	1	2	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	a0004	644	5	5	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	a0005	644	4	3	1	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	a0006	644	3	0	1	0	0	2	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	a0007	644	3	0	2	0	0	1	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	a0008	644	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	a0009	644	1	0	0	0	1	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	a0010	644	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	a0011	644	1	0	1	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	a0012	644	1	0	1	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	a0013	644	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	a0014	644	1	0	1	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	a0015	644	1	0	0	1	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	a0016	644	1	0	1	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL13_chr15_90244556_90270477	1/1	a0001	751	212	62	44	75	10	19	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	a0002	751	179	12	36	109	4	18	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	a0003	751	12	10	1	1	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	a0004	751	8	0	0	8	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	a0005	751	5	2	0	3	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	a0006	751	4	3	1	0	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	a0007	751	3	3	0	0	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	a0008	751	1	1	0	0	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	a0009	751	1	0	0	0	0	1	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	a0010	751	1	1	0	0	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	a0011	751	1	0	0	1	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	a0012	751	1	0	0	0	0	1	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	a0013	669	1	0	0	0	0	1	copy fasta	TTLL13	chr15	90244556	90270477