JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TTLL13_chr15_90244556_90270477	0/0	a0014	751	1	0	0	1	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	a0015	751	1	0	0	0	0	1	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	a0016	751	1	0	0	0	0	1	copy fasta	TTLL13	chr15	90244556	90270477
TTLL1_chr22_43034516_43094391	1/1	a0001	423	355	93	67	131	18	44	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	a0002	423	4	3	1	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	a0003	423	1	0	0	1	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL2_chr6_167320086_167347688	0/0	a0001	592	246	31	46	126	10	33	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	1/1	a0002	592	55	1	8	34	2	8	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	a0003	592	22	0	7	15	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	a0004	592	20	13	3	0	2	2	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	a0005	592	18	11	3	0	3	1	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	a0006	592	15	13	2	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	a0007	592	13	12	1	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	a0008	592	9	0	0	9	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	a0009	592	6	4	1	1	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	a0010	592	4	4	0	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	a0011	592	3	3	0	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	a0012	592	2	1	1	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	a0013	592	2	2	0	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	a0014	592	1	0	0	1	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	a0015	592	1	0	1	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	a0016	592	1	1	0	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	a0017	592	1	0	0	1	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	a0018	592	1	0	1	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	a0019	592	1	0	0	1	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	a0020	592	1	0	0	0	1	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	a0021	592	1	1	0	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	a0022	592	1	1	0	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL3_chr3_9805262_9841365	1/1	a0001	815	224	41	42	116	4	19	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	a0002	815	108	27	24	34	10	13	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	a0003	815	31	16	4	5	4	2	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	a0004	815	9	0	0	9	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	a0005	815	4	0	0	4	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	a0006	717	4	0	2	2	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	a0007	815	4	0	0	4	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	a0008	815	2	2	0	0	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	a0009	815	2	0	0	2	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	a0010	815	2	0	0	2	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	a0011	815	2	2	0	0	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	a0012	815	1	1	0	0	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	a0013	815	1	1	0	0	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	a0014	815	1	0	1	0	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	a0015	603	1	0	1	0	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	a0016	815	1	0	0	1	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	a0017	815	1	0	0	1	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	a0018	815	1	0	0	1	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	a0019	61	1	0	0	1	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL4_chr2_218705835_218760416	0/0	a0001	1199	114	43	23	30	4	14	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	1/1	a0002	1199	99	13	17	45	5	17	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	a0003	1199	13	13	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416