JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TTLL4_chr2_218705835_218760416	0/0	a0004	1199	6	6	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	a0005	1199	5	5	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	a0006	1199	4	0	0	4	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	a0007	1199	3	3	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	a0008	1199	3	3	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	a0009	1199	2	2	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	a0010	1199	2	0	2	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	a0011	1199	2	2	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	a0012	1199	1	0	1	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	a0013	1199	1	1	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	a0014	1199	1	0	0	1	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	a0015	1199	1	1	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	a0016	1199	1	0	1	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	a0017	1199	1	1	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	a0018	1199	1	0	0	0	0	1	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	a0019	1199	1	1	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	a0020	1199	1	0	0	0	1	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL5_chr14_75656246_75960079	0/0	a0001	1281	76	30	5	31	0	10	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	1/1	a0002	1281	58	24	9	16	2	5	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	a0003	1281	32	2	10	18	1	1	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	a0004	1281	14	0	1	10	1	2	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	a0005	1281	5	5	0	0	0	0	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	a0006	1281	4	0	0	3	0	1	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	a0007	1281	4	3	1	0	0	0	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	a0008	1281	2	2	0	0	0	0	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	a0009	1281	1	0	0	0	0	1	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	a0010	1281	1	0	0	1	0	0	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	a0011	1281	1	0	0	1	0	0	copy fasta	TTLL5	chr14	75656246	75960079
TTLL6_chr17_48757234_48822229	1/1	a0001	891	181	40	38	68	9	24	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	a0002	891	76	12	22	32	4	6	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	a0003	891	28	3	3	14	2	6	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	a0004	891	19	13	3	2	1	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	a0005	891	6	6	0	0	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	a0006	891	6	4	2	0	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	a0007	891	2	2	0	0	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	a0008	112	2	0	2	0	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	a0009	891	1	1	0	0	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	a0010	891	1	1	0	0	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	a0011	891	1	1	0	0	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	a0012	891	1	1	0	0	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	a0013	891	1	0	0	1	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	a0014	891	1	0	0	1	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	a0015	891	1	0	0	1	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	a0016	891	1	0	0	1	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	a0017	891	1	0	0	1	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	a0018	112	1	0	0	1	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL7_chr1_83860024_84004132	1/1	a0001	887	296	76	59	111	13	35	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	a0002	887	2	0	0	2	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	a0003	887	1	0	0	0	1	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	a0004	887	1	0	0	1	0	0	copy fasta	TTLL7	chr1	83860024	84004132