JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TTLL7_chr1_83860024_84004132	0/0	a0005	887	1	0	1	0	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	a0006	887	1	0	0	0	0	1	copy fasta	TTLL7	chr1	83860024	84004132
TTLL8_chr22_50013575_50063298	0/0	a0001	752	51	9	13	22	4	3	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	1/0	a0002	752	43	6	13	15	2	6	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/1	a0003	752	38	3	4	27	0	3	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	a0004	752	33	10	7	12	1	3	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	a0005	752	18	11	0	3	0	4	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	a0006	752	15	0	5	6	1	3	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	a0007	752	5	5	0	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	a0008	752	3	0	0	3	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	a0009	752	2	1	1	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	a0010	752	2	1	0	0	1	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	a0011	752	1	0	0	1	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	a0012	752	1	1	0	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	a0013	752	1	1	0	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	a0014	752	1	0	0	1	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	a0015	752	1	0	0	1	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	a0016	752	1	1	0	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	a0017	752	1	1	0	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	a0018	752	1	0	0	0	1	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	a0019	752	1	1	0	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	a0020	752	1	1	0	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	a0021	752	1	1	0	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	a0022	752	1	0	0	1	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	a0023	752	1	1	0	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	a0024	752	1	0	1	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL9_chr20_31865634_31950000	1/1	a0001	439	253	84	61	63	16	27	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	a0002	439	2	2	0	0	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	a0003	439	2	0	0	2	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	a0004	439	1	0	0	1	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	a0005	439	1	1	0	0	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	a0006	439	1	0	0	0	0	1	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	a0007	439	1	0	0	1	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	a0008	439	1	1	0	0	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	a0009	439	1	0	0	1	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	a0010	439	1	0	1	0	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTL_chr2_112477156_112546739	0/0	a0001	377	345	98	62	143	12	30	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	a0002	377	1	0	0	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTN_chr2_178520989_178812423	0/0	a0001	35991	10	0	0	8	0	2	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0002	35991	6	0	0	6	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0003	35991	5	3	2	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0004	35991	5	0	3	0	0	2	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0005	35991	4	0	0	1	0	3	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0006	35991	3	1	2	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0007	35991	3	0	3	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0008	35991	3	0	0	3	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0009	35991	3	1	0	0	0	2	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0010	35991	3	0	0	3	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0011	35991	2	2	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0012	35991	2	0	0	2	0	0	copy fasta	TTN	chr2	178520989	178812423