JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BPIFB1_chr20_33278214_33314871	0/0	a0023	484	1	0	1	0	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB2_chr20_33002704_33028703	1/1	a0001	458	345	81	64	148	14	36	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	a0002	458	32	12	13	0	1	6	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	a0003	458	6	3	3	0	0	0	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	a0004	458	2	1	1	0	0	0	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	a0005	458	1	0	0	0	1	0	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	a0006	458	1	0	1	0	0	0	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	a0007	458	1	1	0	0	0	0	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB3_chr20_33048903_33078847	0/0	a0000	0	1	0	0	1	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/1	a0001	472	192	29	39	100	2	21	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	1/0	a0002	472	132	32	33	41	9	16	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	a0003	472	27	17	3	4	0	3	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	a0004	472	8	7	1	0	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	a0005	472	2	0	1	0	1	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	a0006	472	2	0	0	0	0	2	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	a0007	472	2	2	0	0	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	a0008	472	2	0	0	2	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	a0009	472	1	0	0	1	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	a0010	472	1	1	0	0	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	a0011	472	1	1	0	0	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	a0012	472	1	0	1	0	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	a0013	472	1	1	0	0	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	a0014	472	1	0	0	1	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB4_chr20_33074643_33116751	0/1	a0001	614	138	25	25	67	1	19	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	a0002	614	83	12	18	39	4	10	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	a0003	614	41	13	11	3	6	8	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	a0004	614	13	5	2	3	0	3	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	a0005	614	10	7	2	0	1	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	a0006	614	10	9	1	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	a0007	614	8	0	0	8	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	a0008	614	7	7	0	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	1/0	a0009	614	6	1	1	1	2	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	a0010	614	6	5	1	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	a0011	614	4	4	0	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	a0012	614	3	0	0	3	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	a0013	614	3	1	1	1	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	a0014	614	2	0	0	1	0	1	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	a0015	478	1	0	0	1	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	a0016	614	1	1	0	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	a0017	614	1	1	0	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	a0018	614	1	0	0	0	0	1	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	a0019	614	1	1	0	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	a0020	614	1	0	1	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	a0021	614	1	0	1	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	a0022	614	1	0	0	1	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	a0023	614	1	1	0	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	a0024	614	1	1	0	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB6_chr20_33026648_33049047	0/1	a0001	453	184	28	34	93	5	23	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	1/0	a0002	453	128	20	28	53	12	14	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	a0003	453	18	16	1	1	0	0	copy fasta	BPIFB6	chr20	33026648	33049047