JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TTN_chr2_178520989_178812423	0/0	a0163	35991	1	0	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0164	35991	1	0	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0165	35991	1	0	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0166	35991	1	0	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0167	35991	1	0	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0168	35991	1	0	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0169	35991	1	0	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0170	35991	1	0	0	0	0	1	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0171	35991	1	0	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0172	35991	1	0	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0173	35991	1	0	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0174	35991	1	0	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0175	35991	1	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0176	35991	1	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0177	35991	1	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0178	35991	1	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0179	35991	1	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	1/0	a0180	35991	1	0	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0181	35991	1	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0182	35651	1	0	0	0	0	1	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0183	35991	1	0	0	0	0	1	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0184	35985	1	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0185	35991	1	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0186	35991	1	0	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0187	35985	1	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0188	35985	1	0	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0189	35985	1	0	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0190	35985	1	0	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0191	35985	1	0	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0192	35985	1	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	a0193	35985	1	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178739405_178812423	0/1	a0001	5604	78	11	17	30	4	15	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0002	5604	67	8	9	43	0	7	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0003	5604	28	0	0	26	0	2	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0004	5604	23	10	9	0	1	3	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0005	5604	21	0	12	9	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0006	5604	15	1	8	0	0	6	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0007	5604	12	0	0	12	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0008	5604	7	7	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0009	5604	7	7	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0010	5604	7	0	1	6	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0011	5604	5	5	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0012	5604	4	0	0	4	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0013	5604	4	4	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0014	5604	4	4	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0015	5604	3	3	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0016	5604	3	3	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0017	5604	3	0	2	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0018	5604	2	2	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	a0019	5604	2	2	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423