JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TTYH2_chr17_74208571_74267020	0/0	a0018	534	1	1	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	a0019	534	1	0	0	1	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	a0020	534	1	1	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	a0021	534	1	1	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH3_chr7_2626986_2669802	1/1	a0001	523	383	86	79	164	12	40	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	a0002	523	13	10	3	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	a0003	523	2	0	0	0	2	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	a0004	523	2	2	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	a0005	523	1	0	0	1	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	a0006	523	1	0	0	1	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TUBA1A_chr12_49179795_49194080	1/1	a0001	451	361	93	62	154	16	34	copy fasta	TUBA1A	chr12	49179795	49194080
TUBA1A_chr12_49179795_49194080	0/0	a0002	468	1	1	0	0	0	0	copy fasta	TUBA1A	chr12	49179795	49194080
TUBA1B_chr12_49122782_49136395	1/1	a0001	451	383	93	66	172	14	36	copy fasta	TUBA1B	chr12	49122782	49136395
TUBA1B_chr12_49122782_49136395	0/0	a0002	451	1	1	0	0	0	0	copy fasta	TUBA1B	chr12	49122782	49136395
TUBA1C_chr12_49260082_49279600	1/1	a0001	449	381	96	68	158	15	42	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	a0002	449	7	0	0	7	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	a0003	449	1	0	0	1	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	a0004	449	1	0	0	0	1	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA3C_chr13_19168772_19186824	1/1	a0001	450	424	98	76	191	16	41	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	a0002	379	10	0	0	10	0	0	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	a0003	450	9	0	2	2	2	3	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	a0004	450	2	0	1	0	0	1	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	a0005	297	1	0	0	0	0	1	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	a0006	450	1	0	0	1	0	0	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	a0007	422	1	0	1	0	0	0	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3D_chr2_131471119_131487934	1/1	a0001	450	388	94	76	150	16	50	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	a0002	450	2	0	0	2	0	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	a0003	450	2	0	0	2	0	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3E_chr2_130186745_130203439	0/0	a0001	74	177	33	38	82	9	15	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/1	a0002	450	176	8	33	98	6	30	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	a0003	450	37	37	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	a0004	450	10	0	3	7	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	1/0	a0005	450	8	1	3	0	3	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	a0006	197	7	6	1	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	a0007	450	7	7	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	a0008	450	2	2	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	a0009	450	1	1	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	a0010	450	1	0	0	0	0	1	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	a0011	450	1	0	0	1	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	a0012	450	1	1	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA4A_chr2_219244710_219258918	1/1	a0001	448	376	86	72	156	12	48	copy fasta	TUBA4A	chr2	219244710	219258918
TUBA4B_chr2_219248243_219277197	0/1	a0001	241	147	18	44	35	13	36	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	a0002	241	107	25	16	61	0	5	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	a0003	241	36	12	9	8	1	6	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	a0004	241	33	14	0	19	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	a0005	241	11	10	1	0	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	1/0	a0006	241	6	4	1	0	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	a0007	241	4	4	0	0	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	a0008	106	1	0	0	1	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	a0009	241	1	1	0	0	0	0	copy fasta	TUBA4B	chr2	219248243	219277197