JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TUBA4B_chr2_219248243_219277197	0/0	a0010	241	1	0	0	1	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	a0011	241	1	0	1	0	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	a0012	241	1	0	0	1	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	a0013	241	1	0	0	0	0	1	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA8_chr22_18105809_18136732	1/1	a0001	449	412	91	80	181	16	42	copy fasta	TUBA8	chr22	18105809	18136732
TUBA8_chr22_18105809_18136732	0/0	a0002	449	4	4	0	0	0	0	copy fasta	TUBA8	chr22	18105809	18136732
TUBA8_chr22_18105809_18136732	0/0	a0003	449	4	0	0	4	0	0	copy fasta	TUBA8	chr22	18105809	18136732
TUBA8_chr22_18105809_18136732	0/0	a0004	449	2	0	0	2	0	0	copy fasta	TUBA8	chr22	18105809	18136732
TUBA8_chr22_18105809_18136732	0/0	a0005	449	2	0	0	2	0	0	copy fasta	TUBA8	chr22	18105809	18136732
TUBA8_chr22_18105809_18136732	0/0	a0006	449	1	1	0	0	0	0	copy fasta	TUBA8	chr22	18105809	18136732
TUBA8_chr22_18105809_18136732	0/0	a0007	449	1	0	0	1	0	0	copy fasta	TUBA8	chr22	18105809	18136732
TUBAL3_chr10_5388101_5409828	1/1	a0001	446	363	70	62	177	16	36	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	a0002	446	22	11	7	0	0	4	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	a0003	446	17	0	1	14	0	2	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	a0004	446	3	0	0	3	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	a0005	446	3	3	0	0	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	a0006	446	1	1	0	0	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	a0007	446	1	1	0	0	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	a0008	446	1	0	0	1	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	a0009	446	1	0	0	0	0	1	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	a0010	446	1	1	0	0	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	a0011	446	1	1	0	0	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	a0012	446	1	0	0	0	0	1	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	a0013	446	1	0	0	1	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBB1_chr20_59014429_59031654	1/0	a0001	451	278	70	55	112	13	27	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/1	a0002	451	60	9	14	25	3	8	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	a0003	451	41	5	7	19	0	10	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	a0004	451	6	4	1	0	0	1	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	a0005	451	6	0	0	6	0	0	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	a0006	451	5	1	1	0	0	3	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	a0007	451	2	2	0	0	0	0	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	a0008	451	1	0	0	1	0	0	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	a0009	451	1	0	0	1	0	0	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	a0010	451	1	0	0	0	0	1	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	a0011	451	1	1	0	0	0	0	copy fasta	TUBB1	chr20	59014429	59031654
TUBB2A_chr6_3148666_3162544	1/1	a0001	445	414	90	58	206	14	44	copy fasta	TUBB2A	chr6	3148666	3162544
TUBB2B_chr6_3219277_3232653	1/1	a0001	445	360	92	64	150	12	40	copy fasta	TUBB2B	chr6	3219277	3232653
TUBB3_chr16_89918342_89941097	1/1	a0001	450	396	98	80	150	18	48	copy fasta	TUBB3	chr16	89918342	89941097
TUBB3_chr16_89918342_89941097	0/0	a0002	450	1	0	0	1	0	0	copy fasta	TUBB3	chr16	89918342	89941097
TUBB3_chr16_89918342_89941097	0/0	a0003	109	1	0	0	1	0	0	copy fasta	TUBB3	chr16	89918342	89941097
TUBB4A_chr19_6489319_6507309	1/1	a0001	444	428	98	82	184	18	44	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4B_chr9_137236287_137248707	1/1	a0001	445	418	98	78	178	16	46	copy fasta	TUBB4B	chr9	137236287	137248707
TUBB6_chr18_12303241_12331616	1/1	a0001	446	400	87	74	185	10	42	copy fasta	TUBB6	chr18	12303241	12331616
TUBB6_chr18_12303241_12331616	0/0	a0002	446	1	0	0	1	0	0	copy fasta	TUBB6	chr18	12303241	12331616
TUBB6_chr18_12303241_12331616	0/0	a0003	446	1	1	0	0	0	0	copy fasta	TUBB6	chr18	12303241	12331616
TUBB8B_chr18_42221_54615	0/0	a0001	444	257	20	33	163	7	34	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	1/0	a0002	444	47	14	19	2	6	5	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	a0003	444	30	16	4	1	1	8	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	a0004	444	19	16	3	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	a0005	444	11	9	2	0	0	0	copy fasta	TUBB8B	chr18	42221	54615