JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TUBB8B_chr18_42221_54615	0/0	a0006	441	5	3	2	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	a0007	444	3	3	0	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	a0008	444	3	0	3	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	a0009	444	3	2	1	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	a0010	444	3	0	3	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	a0011	444	2	2	0	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	a0012	444	2	0	0	2	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	a0013	444	2	2	0	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	a0014	444	1	1	0	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	a0015	444	1	0	0	1	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	a0016	444	1	0	0	0	0	1	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	a0017	444	1	0	0	1	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	a0018	444	1	1	0	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	a0019	444	1	0	0	1	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	a0020	444	1	0	0	1	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	a0021	444	1	1	0	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8_chr10_41888_54296	1/1	a0001	444	398	94	68	174	16	44	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	a0002	444	2	0	0	2	0	0	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	a0003	444	1	1	0	0	0	0	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	a0004	444	1	0	0	1	0	0	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	a0005	437	1	0	0	1	0	0	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	a0006	444	1	1	0	0	0	0	copy fasta	TUBB8	chr10	41888	54296
TUBB_chr6_30715352_30730422	0/1	a0001	444	431	96	80	190	18	46	copy fasta	TUBB	chr6	30715352	30730422
TUBD1_chr17_59854479_59897943	0/1	a0001	453	183	42	30	91	1	18	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	1/0	a0002	453	172	46	31	58	15	21	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	a0003	453	3	0	0	0	0	3	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	a0004	453	1	0	1	0	0	0	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	a0005	453	1	0	0	1	0	0	copy fasta	TUBD1	chr17	59854479	59897943
TUBE1_chr6_112065663_112092482	1/1	a0001	475	403	85	72	187	13	44	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	a0002	475	8	8	0	0	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	a0003	475	2	0	0	2	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	a0004	475	2	0	1	0	1	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	a0005	475	2	0	0	2	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	a0006	475	1	0	0	1	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	a0007	475	1	0	1	0	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	a0008	475	1	1	0	0	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBG1_chr17_42604683_42620238	1/1	a0001	451	388	90	74	168	12	42	copy fasta	TUBG1	chr17	42604683	42620238
TUBG2_chr17_42654284_42672006	1/1	a0001	451	208	63	40	81	5	17	copy fasta	TUBG2	chr17	42654284	42672006
TUBG2_chr17_42654284_42672006	0/0	a0002	451	161	23	38	69	7	24	copy fasta	TUBG2	chr17	42654284	42672006
TUBG2_chr17_42654284_42672006	0/0	a0003	451	1	0	0	0	0	1	copy fasta	TUBG2	chr17	42654284	42672006
TUBGCP2_chr10_133273635_133313872	1/1	a0001	902	253	71	66	70	14	30	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	a0002	902	19	15	1	3	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	a0003	902	2	0	0	0	0	2	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	a0004	902	2	2	0	0	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	a0005	902	2	2	0	0	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	a0006	902	2	0	2	0	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	a0007	902	1	0	1	0	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	a0008	902	1	1	0	0	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	a0009	902	1	0	0	1	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	a0010	902	1	1	0	0	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872