JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TUBGCP3_chr13_112480011_112593153	1/1	a0001	907	310	80	48	142	10	28	copy fasta	TUBGCP3	chr13	112480011	112593153
TUBGCP3_chr13_112480011_112593153	0/0	a0002	907	2	0	0	2	0	0	copy fasta	TUBGCP3	chr13	112480011	112593153
TUBGCP4_chr15_43366101_43414771	1/1	a0001	666	333	88	44	156	10	33	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	a0002	666	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	a0003	666	1	0	0	0	0	1	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	a0004	666	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP5_chr15_22994177_23044569	0/1	a0001	1024	334	72	50	153	14	44	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP5_chr15_22994177_23044569	0/0	a0002	1024	12	12	0	0	0	0	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP5_chr15_22994177_23044569	0/0	a0003	1024	2	0	2	0	0	0	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP5_chr15_22994177_23044569	0/0	a0004	1024	1	0	0	1	0	0	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP5_chr15_22994177_23044569	0/0	a0005	1024	1	0	0	1	0	0	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP5_chr15_22994177_23044569	0/0	a0006	1024	1	0	0	1	0	0	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP6_chr22_50212694_50250023	0/1	a0001	1819	129	29	17	66	4	12	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0002	1819	89	26	11	37	1	14	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0003	1819	68	7	8	41	1	11	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0004	1819	45	2	12	27	2	2	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0005	1819	13	10	3	0	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0006	1819	12	0	8	0	2	2	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0007	1819	10	1	4	0	1	4	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0008	1819	9	8	1	0	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0009	1819	8	0	1	7	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0010	1819	6	0	6	0	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0011	1819	4	0	0	3	0	1	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0012	1819	3	3	0	0	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0013	1819	3	0	1	2	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0014	1819	3	2	1	0	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0015	1819	3	0	2	0	1	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0016	1819	2	0	0	0	2	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	1/0	a0017	1819	2	0	0	0	1	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0018	1846	2	0	0	2	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0019	1819	2	0	0	2	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0020	1819	2	0	0	2	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0021	1819	2	1	1	0	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0022	1819	2	2	0	0	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0023	1819	1	1	0	0	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0024	1819	1	0	0	1	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0025	1819	1	1	0	0	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0026	1819	1	0	0	1	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0027	1819	1	0	0	0	1	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0028	1819	1	0	0	0	0	1	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0029	1819	1	0	0	0	0	1	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0030	1819	1	0	0	1	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0031	1819	1	0	0	0	0	1	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0032	1819	1	0	0	1	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0033	1819	1	0	0	0	0	1	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0034	1819	1	0	0	1	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0035	1819	1	1	0	0	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0036	1819	1	0	0	1	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0037	1819	1	0	0	1	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	a0038	1819	1	1	0	0	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023