JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TUBGCP6_chr22_50212694_50250023	0/0	a0039	1819	1	1	0	0	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUB_chr11_8076211_8111243	1/1	a0001	506	451	100	73	217	10	49	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	a0002	506	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	a0003	506	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	a0004	506	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	a0005	506	1	0	0	0	0	1	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	a0006	506	1	0	1	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUFM_chr16_28837411_28851348	1/1	a0001	455	394	83	62	191	12	44	copy fasta	TUFM	chr16	28837411	28851348
TUFM_chr16_28837411_28851348	0/0	a0002	455	1	1	0	0	0	0	copy fasta	TUFM	chr16	28837411	28851348
TUFM_chr16_28837411_28851348	0/0	a0003	455	1	0	0	1	0	0	copy fasta	TUFM	chr16	28837411	28851348
TUFT1_chr1_151535309_151588583	1/1	a0001	390	324	69	56	147	10	40	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	a0002	390	29	11	10	7	0	1	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	a0003	390	6	6	0	0	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	a0004	390	3	0	0	3	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	a0005	390	1	1	0	0	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	a0006	390	1	0	0	1	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	a0007	390	1	0	0	0	0	1	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	a0008	390	1	1	0	0	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUG1_chr22_30964265_30984395	1/1	a0000	0	438	92	82	202	18	42	copy fasta	TUG1	chr22	30964265	30984395
TULP1_chr6_35492874_35517896	0/0	a0001	542	190	43	37	93	4	13	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	0/1	a0002	542	156	36	29	67	7	16	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	1/0	a0003	542	48	0	8	26	4	9	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	0/0	a0004	542	14	10	2	0	1	1	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	0/0	a0005	542	1	0	0	0	0	1	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	0/0	a0006	542	1	0	0	1	0	0	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	0/0	a0007	542	1	1	0	0	0	0	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	0/0	a0008	542	1	0	0	1	0	0	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	0/0	a0009	542	1	0	0	0	0	1	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	0/0	a0010	542	1	0	0	0	0	1	copy fasta	TULP1	chr6	35492874	35517896
TULP2_chr19_48875967_48903744	1/1	a0001	520	270	44	52	137	9	26	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	a0002	520	64	26	13	20	3	2	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	a0003	520	7	7	0	0	0	0	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	a0004	520	7	1	2	0	0	4	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	a0005	520	4	3	1	0	0	0	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	a0006	520	3	0	0	3	0	0	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	a0007	520	2	1	0	1	0	0	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	a0008	520	1	0	0	1	0	0	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	a0009	520	1	0	0	0	0	1	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	a0010	520	1	1	0	0	0	0	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	a0011	520	1	0	0	0	0	1	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	a0012	520	1	1	0	0	0	0	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	a0013	411	1	1	0	0	0	0	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	a0014	520	1	1	0	0	0	0	copy fasta	TULP2	chr19	48875967	48903744
TULP3_chr12_2885891_2946138	1/1	a0001	442	354	88	66	152	12	34	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	a0002	442	7	6	1	0	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	a0003	442	3	0	0	3	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	a0004	442	2	2	0	0	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	a0005	442	1	0	0	1	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	a0006	442	1	1	0	0	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	a0007	442	1	1	0	0	0	0	copy fasta	TULP3	chr12	2885891	2946138