JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TULP3_chr12_2885891_2946138	0/0	a0008	442	1	0	0	1	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	a0009	442	1	0	1	0	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	a0010	442	1	0	0	1	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP4_chr6_158307465_158516828	1/1	a0001	1543	252	65	50	100	11	24	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	a0002	1543	6	1	3	0	1	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	a0003	1543	1	0	0	0	0	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	a0004	1543	1	0	0	0	0	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	a0005	1543	1	0	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	a0006	1543	1	0	0	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	a0007	1543	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	a0008	1543	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	a0009	1543	1	0	0	0	0	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	a0010	1543	1	0	0	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	a0011	1543	1	0	0	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	a0012	1543	1	0	0	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TUNAR_chr14_95871832_95930571	1/1	a0001	65	192	23	32	100	13	22	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	a0002	65	146	63	16	52	1	14	copy fasta	TUNAR	chr14	95871832	95930571
TUSC1_chr9_25671969_25683444	0/0	a0001	209	307	79	54	134	6	34	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/1	a0002	209	62	2	11	35	4	9	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	1/0	a0003	209	55	1	12	38	1	2	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	a0004	210	24	12	3	5	1	3	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	a0005	209	2	0	0	2	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	a0006	209	2	0	2	0	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	a0007	210	2	0	0	2	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	a0008	209	1	1	0	0	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	a0009	209	1	1	0	0	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC2_chr3_50319909_50333223	1/1	a0001	110	396	90	78	168	14	44	copy fasta	TUSC2	chr3	50319909	50333223
TUSC3_chr8_15535263_15771638	1/1	a0001	348	371	87	60	166	14	42	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	a0002	348	1	1	0	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUT1_chr11_62570052_62596523	0/0	a0001	874	280	80	67	87	14	32	copy fasta	TUT1	chr11	62570052	62596523
TUT1_chr11_62570052_62596523	0/0	a0002	874	4	4	0	0	0	0	copy fasta	TUT1	chr11	62570052	62596523
TUT1_chr11_62570052_62596523	0/0	a0003	874	1	1	0	0	0	0	copy fasta	TUT1	chr11	62570052	62596523
TUT1_chr11_62570052_62596523	0/0	a0004	874	1	1	0	0	0	0	copy fasta	TUT1	chr11	62570052	62596523
TUT1_chr11_62570052_62596523	0/0	a0005	874	1	0	0	1	0	0	copy fasta	TUT1	chr11	62570052	62596523
TUT1_chr11_62570052_62596523	0/0	a0006	874	1	0	0	1	0	0	copy fasta	TUT1	chr11	62570052	62596523
TUT1_chr11_62570052_62596523	0/0	a0007	874	1	0	1	0	0	0	copy fasta	TUT1	chr11	62570052	62596523
TUT1_chr11_62570052_62596523	0/0	a0008	874	1	0	0	1	0	0	copy fasta	TUT1	chr11	62570052	62596523
TUT4_chr1_52418275_52558092	1/1	a0001	1645	238	85	31	88	8	24	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	a0002	1645	3	3	0	0	0	0	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	a0003	1645	1	0	1	0	0	0	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	a0004	1645	1	1	0	0	0	0	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	a0005	1645	1	0	0	0	0	1	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	a0006	1645	1	0	1	0	0	0	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	a0007	1645	1	0	0	1	0	0	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	a0008	1645	1	0	1	0	0	0	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	a0009	1645	1	0	0	1	0	0	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	a0010	1645	1	0	0	0	0	1	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	a0011	1645	1	1	0	0	0	0	copy fasta	TUT4	chr1	52418275	52558092
TUT7_chr9_86282733_86359410	0/0	a0001	1494	172	34	36	74	8	20	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	1/1	a0002	1495	163	38	28	73	7	15	copy fasta	TUT7	chr9	86282733	86359410