JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TUT7_chr9_86282733_86359410	0/0	a0003	1494	6	6	0	0	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	a0004	1494	5	4	1	0	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	a0005	1494	4	4	0	0	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	a0006	1495	2	0	1	0	1	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	a0007	1495	1	0	0	1	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	a0008	1495	1	0	0	1	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	a0009	1494	1	1	0	0	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	a0010	1494	1	0	0	0	0	1	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	a0011	1495	1	1	0	0	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	a0012	1495	1	0	0	0	0	1	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	a0013	1494	1	1	0	0	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	a0014	1494	1	0	0	0	0	1	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	a0015	1494	1	1	0	0	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	a0016	1494	1	0	0	1	0	0	copy fasta	TUT7	chr9	86282733	86359410
TVP23A_chr16_10761675_10823794	1/1	a0001	213	404	96	78	170	16	42	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	a0002	213	2	2	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	a0003	213	2	0	0	2	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	a0004	213	1	0	0	1	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	a0005	213	1	0	0	1	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23B_chr17_18776183_18811714	0/0	a0001	205	366	82	68	164	12	40	copy fasta	TVP23B	chr17	18776183	18811714
TVP23B_chr17_18776183_18811714	1/1	a0002	205	68	10	14	30	6	6	copy fasta	TVP23B	chr17	18776183	18811714
TVP23B_chr17_18776183_18811714	0/0	a0003	205	2	2	0	0	0	0	copy fasta	TVP23B	chr17	18776183	18811714
TVP23B_chr17_18776183_18811714	0/0	a0004	205	1	1	0	0	0	0	copy fasta	TVP23B	chr17	18776183	18811714
TVP23B_chr17_18776183_18811714	0/0	a0005	205	1	1	0	0	0	0	copy fasta	TVP23B	chr17	18776183	18811714
TVP23C_chr17_15531980_15568483	0/0	a0001	203	221	55	33	118	7	8	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	1/1	a0002	203	199	42	39	81	9	26	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	a0003	203	2	0	0	2	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	a0004	203	1	0	0	1	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	a0005	203	1	1	0	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TWF1_chr12_43788723_43811317	1/1	a0001	350	382	94	72	160	12	42	copy fasta	TWF1	chr12	43788723	43811317
TWF2_chr3_52223612_52244158	1/1	a0001	349	358	88	72	140	16	40	copy fasta	TWF2	chr3	52223612	52244158
TWF2_chr3_52223612_52244158	0/0	a0002	349	4	0	0	4	0	0	copy fasta	TWF2	chr3	52223612	52244158
TWF2_chr3_52223612_52244158	0/0	a0003	349	3	0	0	3	0	0	copy fasta	TWF2	chr3	52223612	52244158
TWF2_chr3_52223612_52244158	0/0	a0004	349	1	0	0	1	0	0	copy fasta	TWF2	chr3	52223612	52244158
TWIST1_chr7_19110468_19122636	0/0	a0000	0	1	1	0	0	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	1/1	a0001	202	419	92	73	192	12	48	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	a0002	209	7	1	0	6	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	a0003	202	1	0	0	1	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	a0004	130	1	0	0	1	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	a0005	210	1	0	1	0	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	a0006	196	1	0	0	1	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	a0007	202	1	0	0	1	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST2_chr2_238843085_238915534	1/1	a0001	160	338	82	66	136	14	38	copy fasta	TWIST2	chr2	238843085	238915534
TWNK_chr10_100982543_100999403	1/1	a0001	684	365	78	69	161	16	39	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	a0002	684	18	13	5	0	0	0	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	a0003	684	1	0	0	1	0	0	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	a0004	684	1	1	0	0	0	0	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	a0005	684	1	0	0	0	0	1	copy fasta	TWNK	chr10	100982543	100999403
TWSG1_chr18_9329773_9407420	1/1	a0001	223	350	83	61	146	14	44	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	a0002	223	4	1	1	0	2	0	copy fasta	TWSG1	chr18	9329773	9407420