JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BPIFB6_chr20_33026648_33049047	0/0	a0004	453	17	7	3	4	0	3	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	a0005	453	14	12	2	0	0	0	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	a0006	453	12	12	0	0	0	0	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	a0007	453	4	3	1	0	0	0	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	a0008	453	2	0	1	0	1	0	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	a0009	453	2	2	0	0	0	0	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	a0010	453	1	0	0	1	0	0	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	a0011	453	1	0	0	1	0	0	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFB6_chr20_33026648_33049047	0/0	a0012	453	1	0	0	1	0	0	copy fasta	BPIFB6	chr20	33026648	33049047
BPIFC_chr22_32408845_32469446	0/1	a0001	507	154	22	32	75	2	22	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	1/0	a0002	507	129	2	31	69	11	15	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	a0003	507	39	33	6	0	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	a0004	507	28	4	2	22	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	a0005	507	25	1	5	17	1	1	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	a0006	507	16	6	3	1	3	3	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	a0007	507	8	8	0	0	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	a0008	507	8	4	1	0	0	3	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	a0009	507	3	3	0	0	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	a0010	507	2	2	0	0	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	a0011	507	2	2	0	0	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	a0012	507	2	2	0	0	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	a0013	507	1	1	0	0	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	a0014	507	1	1	0	0	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	a0015	507	1	0	0	0	0	1	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	a0016	507	1	0	0	0	1	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	a0017	507	1	1	0	0	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	a0018	507	1	0	0	0	0	1	copy fasta	BPIFC	chr22	32408845	32469446
BPI_chr20_38299156_38342505	0/1	a0001	483	84	6	23	44	6	4	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0002	483	78	31	19	9	8	11	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0003	483	36	0	1	34	0	1	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0004	483	31	12	5	10	0	4	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	1/0	a0005	483	25	6	2	12	0	4	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0006	483	24	3	8	5	1	7	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0007	483	19	0	2	9	2	6	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0008	483	15	0	0	15	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0009	483	15	1	3	8	0	3	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0010	483	15	1	1	12	0	1	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0011	483	11	5	0	6	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0012	483	9	7	2	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0013	483	8	5	0	3	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0014	483	5	0	0	5	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0015	483	5	0	0	4	0	1	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0016	483	4	0	0	4	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0017	483	4	0	0	4	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0018	483	4	0	4	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0019	483	3	0	0	3	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0020	483	3	3	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0021	483	3	2	0	1	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0022	483	2	2	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	a0023	483	2	0	0	2	0	0	copy fasta	BPI	chr20	38299156	38342505