JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TXK_chr4_48061393_48139250	1/1	a0001	527	299	89	38	132	4	34	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	a0002	527	49	3	20	14	5	7	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	a0003	527	11	0	6	0	4	1	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	a0004	527	2	0	0	2	0	0	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	a0005	527	1	0	0	0	1	0	copy fasta	TXK	chr4	48061393	48139250
TXLNA_chr1_32174675_32203285	1/1	a0001	546	343	87	56	145	12	41	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	a0002	546	7	5	2	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	a0003	546	1	0	0	1	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	a0004	546	1	0	0	0	0	1	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	a0005	546	1	1	0	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	a0006	546	1	1	0	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNB_chr6_139235061_139296998	1/0	a0001	684	115	10	21	61	6	16	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/1	a0002	684	98	25	21	34	2	15	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	a0003	684	38	25	8	0	2	3	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	a0004	684	14	12	2	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	a0005	684	8	5	0	3	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	a0006	684	7	7	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	a0007	684	2	0	0	2	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	a0008	684	2	2	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	a0009	684	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	a0010	684	1	0	1	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	a0011	684	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	a0012	684	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	a0013	684	1	0	1	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	a0014	684	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	a0015	684	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	a0016	684	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	a0017	684	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	a0018	684	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNG_chrX_16781466_16849519	1/1	a0001	528	257	61	51	106	11	26	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	a0002	528	3	3	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	a0003	528	1	1	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	a0004	428	1	0	0	1	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	a0005	528	1	0	1	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	a0006	528	1	1	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXN2_chr22_36462046_36486640	1/1	a0001	166	338	93	62	137	10	34	copy fasta	TXN2	chr22	36462046	36486640
TXN2_chr22_36462046_36486640	0/0	a0002	166	1	1	0	0	0	0	copy fasta	TXN2	chr22	36462046	36486640
TXN2_chr22_36462046_36486640	0/0	a0003	166	1	0	0	1	0	0	copy fasta	TXN2	chr22	36462046	36486640
TXNDC11_chr16_11674083_11747857	0/0	a0001	958	170	33	23	85	9	20	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	1/0	a0002	958	96	36	15	32	2	10	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/1	a0003	958	84	1	23	42	6	11	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	a0004	958	6	0	0	5	0	1	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	a0005	958	3	2	1	0	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	a0006	958	3	3	0	0	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	a0007	958	2	2	0	0	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	a0008	958	1	0	0	1	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	a0009	958	1	0	0	0	1	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	a0010	958	1	0	0	1	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	a0011	958	1	0	0	1	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	a0012	958	1	0	0	1	0	0	copy fasta	TXNDC11	chr16	11674083	11747857