JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TXNDC11_chr16_11674083_11747857	0/0	a0013	958	1	1	0	0	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	a0014	958	1	0	0	1	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	a0015	958	1	0	0	1	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	a0016	958	1	0	0	1	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	a0017	958	1	0	0	1	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC12_chr1_52015131_52060191	1/1	a0001	172	241	81	32	86	6	34	copy fasta	TXNDC12	chr1	52015131	52060191
TXNDC12_chr1_52015131_52060191	0/0	a0002	172	7	6	1	0	0	0	copy fasta	TXNDC12	chr1	52015131	52060191
TXNDC12_chr1_52015131_52060191	0/0	a0003	172	4	3	1	0	0	0	copy fasta	TXNDC12	chr1	52015131	52060191
TXNDC15_chr5_134869371_134906635	1/1	a0001	360	402	91	78	173	12	46	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	a0002	360	12	0	0	12	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	a0003	360	1	0	0	1	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	a0004	360	1	0	0	1	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	a0005	360	1	0	0	1	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	a0006	360	1	1	0	0	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC16_chr14_52425596_52557505	1/1	a0001	825	152	24	19	63	11	33	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	a0002	825	67	12	8	40	1	6	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	a0003	825	9	7	2	0	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	a0004	825	3	1	1	0	0	1	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	a0005	825	2	1	1	0	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	a0006	825	1	1	0	0	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	a0007	825	1	0	1	0	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	a0008	825	1	1	0	0	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	a0009	825	1	0	0	1	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	a0010	825	1	1	0	0	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC17_chr17_6636060_6649541	1/1	a0001	123	417	96	68	192	14	45	copy fasta	TXNDC17	chr17	6636060	6649541
TXNDC17_chr17_6636060_6649541	0/0	a0002	123	3	0	2	0	0	1	copy fasta	TXNDC17	chr17	6636060	6649541
TXNDC2_chr18_9880973_9894275	0/0	a0001	486	223	27	35	132	10	19	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	a0002	471	43	5	1	36	1	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	a0003	471	38	21	12	0	0	5	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	a0004	486	33	9	13	6	0	5	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	a0005	486	23	1	3	6	2	11	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	a0006	486	20	3	13	0	1	3	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	a0007	486	13	13	0	0	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/1	a0008	486	9	1	3	0	3	1	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	a0009	471	5	5	0	0	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	1/0	a0010	486	4	1	2	0	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	a0011	486	4	0	0	4	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	a0012	471	3	0	1	0	1	1	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	a0013	486	2	0	0	2	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	a0014	486	2	0	0	2	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	a0015	486	2	0	1	0	0	1	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	a0016	486	2	2	0	0	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	a0017	486	1	0	0	1	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	a0018	486	1	0	0	1	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC5_chr6_7876517_7915788	1/1	a0001	432	388	94	65	170	16	41	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	a0002	433	4	0	4	0	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	a0003	432	2	2	0	0	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	a0004	432	2	0	1	0	0	1	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	a0005	432	1	1	0	0	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	a0006	432	1	0	1	0	0	0	copy fasta	TXNDC5	chr6	7876517	7915788