JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TXNDC5_chr6_7876517_7915788	0/0	a0007	432	1	0	0	0	0	1	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	a0008	432	1	0	0	0	0	1	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	a0009	432	1	0	1	0	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	a0010	432	1	1	0	0	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC8_chr9_110298476_110342863	0/0	a0000	0	1	0	1	0	0	0	copy fasta	TXNDC8	chr9	110298476	110342863
TXNDC8_chr9_110298476_110342863	1/1	a0001	95	393	74	75	186	16	40	copy fasta	TXNDC8	chr9	110298476	110342863
TXNDC8_chr9_110298476_110342863	0/0	a0002	95	20	16	2	0	0	2	copy fasta	TXNDC8	chr9	110298476	110342863
TXNDC8_chr9_110298476_110342863	0/0	a0003	95	1	1	0	0	0	0	copy fasta	TXNDC8	chr9	110298476	110342863
TXNDC8_chr9_110298476_110342863	0/0	a0004	95	1	1	0	0	0	0	copy fasta	TXNDC8	chr9	110298476	110342863
TXNDC9_chr2_99313982_99341333	1/1	a0001	226	355	86	72	148	11	36	copy fasta	TXNDC9	chr2	99313982	99341333
TXNDC9_chr2_99313982_99341333	0/0	a0002	226	12	9	3	0	0	0	copy fasta	TXNDC9	chr2	99313982	99341333
TXNDC9_chr2_99313982_99341333	0/0	a0003	226	2	0	1	0	1	0	copy fasta	TXNDC9	chr2	99313982	99341333
TXNDC9_chr2_99313982_99341333	0/0	a0004	226	1	1	0	0	0	0	copy fasta	TXNDC9	chr2	99313982	99341333
TXNIP_chr1_145987435_146001579	1/1	a0001	391	405	94	74	190	10	35	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	a0002	391	2	0	0	0	0	2	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	a0003	391	1	0	0	0	0	1	copy fasta	TXNIP	chr1	145987435	146001579
TXNL1_chr18_56592209_56643592	1/1	a0001	289	341	89	46	162	14	28	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	a0002	289	1	1	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL4A_chr18_79965813_79993563	1/1	a0001	142	389	92	68	170	14	43	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	a0002	142	1	0	0	0	0	1	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4B_chr16_72079857_72098620	1/1	a0001	149	409	83	77	190	16	41	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	a0002	149	1	0	1	0	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	a0003	149	1	1	0	0	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	a0004	149	1	0	0	0	0	1	copy fasta	TXNL4B	chr16	72079857	72098620
TXNRD1_chr12_104210779_104355307	1/1	a0001	647	300	92	54	98	18	36	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD1_chr12_104210779_104355307	0/0	a0002	647	1	1	0	0	0	0	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD1_chr12_104210779_104355307	0/0	a0003	647	1	1	0	0	0	0	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD2_chr22_19870522_19946818	0/0	a0001	522	132	14	16	86	5	11	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/1	a0002	522	68	23	18	15	4	7	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	a0003	522	68	3	16	38	1	10	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	a0004	522	58	35	11	5	1	6	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	1/0	a0005	522	17	0	9	3	0	4	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	a0006	522	10	1	4	2	2	1	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	a0007	522	6	4	0	1	0	1	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	a0008	522	4	4	0	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	a0009	522	2	0	0	2	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	a0010	522	2	2	0	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	a0011	522	2	2	0	0	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	a0012	446	1	0	0	0	0	1	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	a0013	522	1	0	0	0	1	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	a0014	522	1	0	0	0	0	1	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD3_chr3_126602050_126660124	1/1	a0001	53	352	93	74	132	14	37	copy fasta	TXNRD3	chr3	126602050	126660124
TXNRD3_chr3_126602050_126660124	0/0	a0002	53	1	0	0	0	0	1	copy fasta	TXNRD3	chr3	126602050	126660124
TXNRD3_chr3_126602050_126660124	0/0	a0003	53	1	1	0	0	0	0	copy fasta	TXNRD3	chr3	126602050	126660124
TXN_chr9_110238810_110261507	1/1	a0001	105	465	98	82	220	18	45	copy fasta	TXN	chr9	110238810	110261507
TXN_chr9_110238810_110261507	0/0	a0002	105	1	0	0	0	0	1	copy fasta	TXN	chr9	110238810	110261507
TYK2_chr19_10345533_10385572	1/0	a0001	1187	224	76	49	66	12	20	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/1	a0002	1187	106	9	9	73	2	12	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	a0003	1187	13	0	6	2	0	5	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	a0004	1187	7	0	6	0	1	0	copy fasta	TYK2	chr19	10345533	10385572