JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TYK2_chr19_10345533_10385572	0/0	a0005	1187	5	0	4	0	1	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	a0006	1187	5	5	0	0	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	a0007	1187	3	3	0	0	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	a0008	1187	3	0	0	3	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	a0009	1187	1	0	0	0	0	1	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	a0010	1187	1	0	0	1	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	a0011	1187	1	0	0	1	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	a0012	1187	1	0	0	1	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	a0013	1187	1	0	0	0	0	1	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	a0014	1187	1	1	0	0	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	a0015	1187	1	0	0	0	0	1	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	a0016	1187	1	0	0	1	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	a0017	1187	1	0	0	1	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	a0018	1187	1	0	0	1	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYMP_chr22_50520752_50535012	1/1	a0001	482	339	92	65	130	14	36	copy fasta	TYMP	chr22	50520752	50535012
TYMP_chr22_50520752_50535012	0/0	a0002	482	67	6	9	44	2	6	copy fasta	TYMP	chr22	50520752	50535012
TYMP_chr22_50520752_50535012	0/0	a0003	482	2	0	1	0	0	1	copy fasta	TYMP	chr22	50520752	50535012
TYMP_chr22_50520752_50535012	0/0	a0004	482	1	0	0	0	0	1	copy fasta	TYMP	chr22	50520752	50535012
TYMP_chr22_50520752_50535012	0/0	a0005	482	1	0	0	1	0	0	copy fasta	TYMP	chr22	50520752	50535012
TYMP_chr22_50520752_50535012	0/0	a0006	482	1	0	0	1	0	0	copy fasta	TYMP	chr22	50520752	50535012
TYMP_chr22_50520752_50535012	0/0	a0007	482	1	0	1	0	0	0	copy fasta	TYMP	chr22	50520752	50535012
TYMS_chr18_652653_678578	1/1	a0001	313	479	96	80	233	18	50	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	a0002	313	2	0	2	0	0	0	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	a0003	313	1	0	0	1	0	0	copy fasta	TYMS	chr18	652653	678578
TYRO3_chr15_41554212_41588589	1/1	a0001	890	292	79	60	112	8	31	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	a0002	890	29	7	6	0	4	12	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	a0003	890	2	2	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	a0004	890	1	0	0	0	0	1	copy fasta	TYRO3	chr15	41554212	41588589
TYROBP_chr19_35899403_35913295	1/1	a0001	113	380	88	80	153	17	40	copy fasta	TYROBP	chr19	35899403	35913295
TYROBP_chr19_35899403_35913295	0/0	a0002	113	21	0	0	16	1	4	copy fasta	TYROBP	chr19	35899403	35913295
TYROBP_chr19_35899403_35913295	0/0	a0003	113	1	0	0	1	0	0	copy fasta	TYROBP	chr19	35899403	35913295
TYROBP_chr19_35899403_35913295	0/0	a0004	113	1	1	0	0	0	0	copy fasta	TYROBP	chr19	35899403	35913295
TYROBP_chr19_35899403_35913295	0/0	a0005	113	1	0	0	0	0	1	copy fasta	TYROBP	chr19	35899403	35913295
TYROBP_chr19_35899403_35913295	0/0	a0006	113	1	1	0	0	0	0	copy fasta	TYROBP	chr19	35899403	35913295
TYROBP_chr19_35899403_35913295	0/0	a0007	113	1	0	0	0	0	1	copy fasta	TYROBP	chr19	35899403	35913295
TYRP1_chr9_12688385_12715285	1/1	a0001	537	433	86	82	199	16	48	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	a0002	518	3	3	0	0	0	0	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	a0003	537	1	1	0	0	0	0	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	a0004	537	1	0	0	1	0	0	copy fasta	TYRP1	chr9	12688385	12715285
TYR_chr11_89172875_89300759	1/0	a0001	529	275	84	29	125	7	29	copy fasta	TYR	chr11	89172875	89300759
TYR_chr11_89172875_89300759	0/1	a0002	529	16	4	8	1	1	1	copy fasta	TYR	chr11	89172875	89300759
TYR_chr11_89172875_89300759	0/0	a0003	529	12	0	5	0	3	4	copy fasta	TYR	chr11	89172875	89300759
TYR_chr11_89172875_89300759	0/0	a0004	529	2	0	1	0	1	0	copy fasta	TYR	chr11	89172875	89300759
TYR_chr11_89172875_89300759	0/0	a0005	529	1	0	1	0	0	0	copy fasta	TYR	chr11	89172875	89300759
TYSND1_chr10_70132981_70151700	1/0	a0001	566	232	67	44	81	11	28	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/1	a0002	566	183	21	36	104	4	17	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	a0003	566	17	1	0	14	0	2	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	a0004	566	5	5	0	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	a0005	566	3	0	2	0	1	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	a0006	566	3	0	0	0	2	1	copy fasta	TYSND1	chr10	70132981	70151700