JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TYSND1_chr10_70132981_70151700	0/0	a0007	566	3	0	0	1	0	2	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	a0008	566	2	2	0	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	a0009	566	2	2	0	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	a0010	560	1	0	0	1	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	a0011	566	1	0	0	1	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	a0012	566	1	0	0	1	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	a0013	566	1	0	0	1	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	a0014	566	1	0	0	1	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	a0015	566	1	0	1	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	a0016	566	1	0	0	1	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	a0017	566	1	0	1	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYW1B_chr7_72569513_72833200	0/1	a0001	338	177	31	24	98	5	18	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	a0002	668	53	20	7	18	1	7	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	a0003	668	19	0	6	9	2	2	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	a0004	338	17	7	7	0	0	3	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	a0005	338	8	7	1	0	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	a0006	338	4	4	0	0	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	a0007	338	2	1	0	0	0	1	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	a0008	338	2	0	0	2	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	1/0	a0009	668	1	0	0	0	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	a0010	668	1	0	0	0	0	1	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	a0011	338	1	0	0	1	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	a0012	338	1	0	1	0	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1_chr7_66991833_67244514	1/1	a0001	732	268	40	48	139	9	30	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	a0002	732	68	24	19	12	1	12	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	a0003	732	11	8	3	0	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	a0004	732	8	8	0	0	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	a0005	732	3	3	0	0	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	a0006	732	1	1	0	0	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	a0007	732	1	0	0	1	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	a0008	732	1	0	0	1	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	a0009	732	1	0	0	1	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	a0010	732	1	1	0	0	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	a0011	732	1	1	0	0	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW3_chr1_74728152_74771677	1/0	a0001	259	182	45	46	59	10	21	copy fasta	TYW3	chr1	74728152	74771677
TYW3_chr1_74728152_74771677	0/1	a0002	259	139	25	22	74	2	15	copy fasta	TYW3	chr1	74728152	74771677
TYW3_chr1_74728152_74771677	0/0	a0003	259	10	10	0	0	0	0	copy fasta	TYW3	chr1	74728152	74771677
TYW3_chr1_74728152_74771677	0/0	a0004	259	1	0	0	1	0	0	copy fasta	TYW3	chr1	74728152	74771677
TYW5_chr2_199923913_199960491	1/1	a0001	315	332	78	67	146	11	28	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	a0002	315	52	0	5	40	1	6	copy fasta	TYW5	chr2	199923913	199960491
U2AF1L4_chr19_35737527_35750418	1/1	a0001	181	401	92	74	175	14	44	copy fasta	U2AF1L4	chr19	35737527	35750418
U2AF1L4_chr19_35737527_35750418	0/0	a0002	181	2	2	0	0	0	0	copy fasta	U2AF1L4	chr19	35737527	35750418
U2AF1L4_chr19_35737527_35750418	0/0	a0003	181	1	0	0	1	0	0	copy fasta	U2AF1L4	chr19	35737527	35750418
U2AF1_chr21_43087956_43112570	0/0	a0001	240	150	18	12	90	6	24	copy fasta	U2AF1	chr21	43087956	43112570
U2AF2_chr19_55650035_55679716	1/1	a0001	475	394	98	80	156	16	42	copy fasta	U2AF2	chr19	55650035	55679716
U2SURP_chr3_142996570_143065725	1/1	a0001	1029	373	85	68	164	12	42	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	a0002	1029	2	2	0	0	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	a0003	1029	1	0	0	1	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	a0004	1029	1	0	0	1	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	a0005	1029	1	1	0	0	0	0	copy fasta	U2SURP	chr3	142996570	143065725