JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UACA_chr15_70649554_70768558	1/1	a0001	1416	271	60	43	125	10	31	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	a0002	1416	8	8	0	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	a0003	1416	7	6	1	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	a0004	1416	6	0	0	6	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	a0005	1416	5	4	1	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	a0006	1416	4	2	2	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	a0007	1416	2	2	0	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	a0008	1416	1	0	0	1	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	a0009	1416	1	0	0	0	0	1	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	a0010	1416	1	0	0	1	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	a0011	1416	1	0	1	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	a0012	1416	1	1	0	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	a0013	1416	1	0	0	1	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	a0014	1416	1	1	0	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UAP1L1_chr9_137072517_137089538	0/0	a0001	507	197	41	32	94	6	24	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	1/1	a0002	507	144	14	41	55	10	22	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	a0003	507	31	29	0	2	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	a0004	507	1	0	0	1	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	a0005	507	1	1	0	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	a0006	507	1	1	0	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	a0007	507	1	0	1	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	a0008	507	1	1	0	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	a0009	507	1	0	0	1	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	a0010	507	1	0	1	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	a0011	507	1	0	1	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	a0012	507	1	1	0	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	a0013	507	1	0	0	1	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1_chr1_162556722_162606240	1/1	a0001	522	395	72	76	182	15	48	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	a0002	522	6	6	0	0	0	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	a0003	522	5	5	0	0	0	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	a0004	522	4	4	0	0	0	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	a0005	522	1	0	0	0	1	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	a0006	522	1	1	0	0	0	0	copy fasta	UAP1	chr1	162556722	162606240
UBA1_chrX_47188829_47220128	0/0	a0000	0	1	1	0	0	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	1/1	a0001	1058	206	60	33	88	6	17	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	a0002	1058	52	10	11	18	1	12	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	a0003	1058	8	0	0	8	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	a0004	1058	3	3	0	0	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	a0005	1058	2	2	0	0	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	a0006	64	1	0	0	1	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	a0007	136	1	0	0	1	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	a0008	275	1	0	0	1	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	a0009	1058	1	0	1	0	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	a0010	1058	1	0	1	0	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	a0011	1058	1	1	0	0	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	a0012	1058	1	1	0	0	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	a0013	1058	1	0	0	1	0	0	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	a0014	1058	1	0	0	0	0	1	copy fasta	UBA1	chrX	47188829	47220128
UBA2_chr19_34423381_34476251	1/1	a0001	640	316	85	62	114	16	37	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	a0002	640	2	0	0	0	0	2	copy fasta	UBA2	chr19	34423381	34476251