JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UBA2_chr19_34423381_34476251	0/0	a0003	640	1	1	0	0	0	0	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	a0004	640	1	0	0	0	0	1	copy fasta	UBA2	chr19	34423381	34476251
UBA3_chr3_69049730_69085365	1/1	a0001	463	417	94	73	192	14	42	copy fasta	UBA3	chr3	69049730	69085365
UBA3_chr3_69049730_69085365	0/0	a0002	463	2	0	0	0	2	0	copy fasta	UBA3	chr3	69049730	69085365
UBA3_chr3_69049730_69085365	0/0	a0003	463	1	0	1	0	0	0	copy fasta	UBA3	chr3	69049730	69085365
UBA52_chr19_18566857_18582550	1/1	a0001	128	412	96	80	172	16	46	copy fasta	UBA52	chr19	18566857	18582550
UBA5_chr3_132655329_132684794	0/0	a0001	404	333	89	42	160	14	28	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	a0002	404	3	3	0	0	0	0	copy fasta	UBA5	chr3	132655329	132684794
UBA6_chr4_67607652_67706155	1/1	a0001	1052	248	63	55	98	10	20	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	a0002	1052	70	15	8	34	4	9	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	a0003	1052	4	1	3	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	a0004	1052	1	1	0	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	a0005	1052	1	0	0	0	0	1	copy fasta	UBA6	chr4	67607652	67706155
UBA7_chr3_49800209_49818953	1/1	a0001	1012	326	78	64	119	16	47	copy fasta	UBA7	chr3	49800209	49818953
UBA7_chr3_49800209_49818953	0/0	a0002	1012	10	8	2	0	0	0	copy fasta	UBA7	chr3	49800209	49818953
UBA7_chr3_49800209_49818953	0/0	a0003	1012	1	1	0	0	0	0	copy fasta	UBA7	chr3	49800209	49818953
UBA7_chr3_49800209_49818953	0/0	a0004	1012	1	0	1	0	0	0	copy fasta	UBA7	chr3	49800209	49818953
UBA7_chr3_49800209_49818953	0/0	a0005	1012	1	1	0	0	0	0	copy fasta	UBA7	chr3	49800209	49818953
UBA7_chr3_49800209_49818953	0/0	a0006	1012	1	0	0	1	0	0	copy fasta	UBA7	chr3	49800209	49818953
UBA7_chr3_49800209_49818953	0/0	a0007	1012	1	0	1	0	0	0	copy fasta	UBA7	chr3	49800209	49818953
UBA7_chr3_49800209_49818953	0/0	a0008	1012	1	0	0	0	0	1	copy fasta	UBA7	chr3	49800209	49818953
UBA7_chr3_49800209_49818953	0/0	a0009	407	1	0	0	1	0	0	copy fasta	UBA7	chr3	49800209	49818953
UBA7_chr3_49800209_49818953	0/0	a0010	1012	1	0	0	1	0	0	copy fasta	UBA7	chr3	49800209	49818953
UBAC1_chr9_135927969_135966373	1/1	a0001	405	311	92	61	119	9	28	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	a0002	404	58	1	8	34	3	12	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	a0003	404	4	0	0	4	0	0	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	a0004	405	1	0	0	1	0	0	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	a0005	405	1	0	0	0	0	1	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	a0006	405	1	0	1	0	0	0	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	a0007	405	1	1	0	0	0	0	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	a0008	405	1	0	0	0	0	1	copy fasta	UBAC1	chr9	135927969	135966373
UBAC2_chr13_99195854_99391504	1/1	a0001	344	377	82	72	163	16	42	copy fasta	UBAC2	chr13	99195854	99391504
UBAC2_chr13_99195854_99391504	0/0	a0002	344	2	0	0	2	0	0	copy fasta	UBAC2	chr13	99195854	99391504
UBAC2_chr13_99195854_99391504	0/0	a0003	344	1	0	0	1	0	0	copy fasta	UBAC2	chr13	99195854	99391504
UBALD1_chr16_4603884_4619888	1/1	a0001	177	340	96	58	136	8	40	copy fasta	UBALD1	chr16	4603884	4619888
UBALD2_chr17_76260348_76276298	1/1	a0001	164	409	96	76	176	14	45	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	0/0	a0002	164	1	0	0	0	0	1	copy fasta	UBALD2	chr17	76260348	76276298
UBAP1L_chr15_65087760_65120200	1/1	a0001	381	216	87	50	52	6	19	copy fasta	UBAP1L	chr15	65087760	65120200
UBAP1L_chr15_65087760_65120200	0/0	a0002	258	9	1	6	1	0	1	copy fasta	UBAP1L	chr15	65087760	65120200
UBAP1L_chr15_65087760_65120200	0/0	a0003	381	3	3	0	0	0	0	copy fasta	UBAP1L	chr15	65087760	65120200
UBAP1L_chr15_65087760_65120200	0/0	a0004	381	2	0	2	0	0	0	copy fasta	UBAP1L	chr15	65087760	65120200
UBAP1L_chr15_65087760_65120200	0/0	a0005	381	1	1	0	0	0	0	copy fasta	UBAP1L	chr15	65087760	65120200
UBAP1L_chr15_65087760_65120200	0/0	a0006	381	1	0	0	1	0	0	copy fasta	UBAP1L	chr15	65087760	65120200
UBAP1_chr9_34174043_34257523	1/1	a0001	502	326	84	71	118	15	36	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	0/0	a0002	502	9	0	0	8	1	0	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	0/0	a0003	502	3	3	0	0	0	0	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	0/0	a0004	502	2	0	0	2	0	0	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	0/0	a0005	502	1	0	1	0	0	0	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	0/0	a0006	502	1	1	0	0	0	0	copy fasta	UBAP1	chr9	34174043	34257523
UBAP2L_chr1_154215955_154275847	1/1	a0001	1087	344	92	62	140	10	38	copy fasta	UBAP2L	chr1	154215955	154275847