JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UBAP2L_chr1_154215955_154275847	0/0	a0002	1087	2	0	0	2	0	0	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	a0003	1087	1	0	0	1	0	0	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	a0004	1087	1	0	0	0	0	1	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	a0005	1087	1	0	0	0	0	1	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	a0006	1087	1	0	0	1	0	0	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2_chr9_33916693_34053887	0/1	a0001	1119	167	25	34	77	9	21	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	a0002	1119	149	47	27	48	7	20	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	a0003	1119	7	0	0	7	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	a0004	1119	5	4	1	0	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	a0005	1119	4	0	4	0	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	a0006	1119	4	4	0	0	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	a0007	1119	3	0	0	3	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	a0008	1119	3	2	1	0	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	a0009	1119	2	0	0	2	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	a0010	1119	2	0	0	0	0	2	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	a0011	1119	2	2	0	0	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	a0012	1119	1	0	0	1	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	a0013	1119	1	0	0	0	0	1	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	a0014	1119	1	0	1	0	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	a0015	1119	1	0	0	1	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	a0016	1119	1	0	0	0	0	1	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	a0017	1119	1	0	0	1	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	1/0	a0018	1119	1	0	0	0	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	a0019	1119	1	0	0	0	0	1	copy fasta	UBAP2	chr9	33916693	34053887
UBASH3A_chr21_42398902_42452684	1/0	a0001	661	173	27	31	89	7	18	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/1	a0002	661	170	47	40	55	8	19	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	a0003	661	30	1	1	24	0	4	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	a0004	661	15	12	3	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	a0005	661	8	2	5	0	1	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	a0006	661	2	2	0	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	a0007	661	2	0	2	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	a0008	661	2	0	0	0	0	2	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	a0009	661	1	1	0	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	a0010	661	1	1	0	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	a0011	661	1	0	0	0	0	1	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	a0012	661	1	0	0	1	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	a0013	661	1	0	0	1	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	a0014	661	1	1	0	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3B_chr11_122650722_122819473	1/1	a0001	649	235	78	38	84	8	25	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	a0002	649	46	2	18	16	6	4	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	a0003	649	4	4	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	a0004	649	3	0	0	2	0	1	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	a0005	649	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	a0006	649	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBB_chr17_16376091_16387740	1/1	a0001	229	352	90	70	142	10	38	copy fasta	UBB	chr17	16376091	16387740
UBC_chr12_124906646_124919650	1/1	a0001	685	428	85	71	208	17	45	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	a0002	533	8	0	2	5	0	1	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	a0003	609	5	1	3	0	1	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	a0004	837	3	2	1	0	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	a0005	685	1	0	0	1	0	0	copy fasta	UBC	chr12	124906646	124919650