JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UBC_chr12_124906646_124919650	0/0	a0006	457	1	0	1	0	0	0	copy fasta	UBC	chr12	124906646	124919650
UBD_chr6_29550515_29564732	0/1	a0001	165	250	46	49	123	6	25	copy fasta	UBD	chr6	29550515	29564732
UBD_chr6_29550515_29564732	0/0	a0002	165	103	44	9	45	0	5	copy fasta	UBD	chr6	29550515	29564732
UBD_chr6_29550515_29564732	0/0	a0003	165	78	2	20	39	8	9	copy fasta	UBD	chr6	29550515	29564732
UBD_chr6_29550515_29564732	0/0	a0004	165	29	2	6	15	2	4	copy fasta	UBD	chr6	29550515	29564732
UBD_chr6_29550515_29564732	0/0	a0005	165	1	1	0	0	0	0	copy fasta	UBD	chr6	29550515	29564732
UBD_chr6_29550515_29564732	0/0	a0006	165	1	0	0	0	0	1	copy fasta	UBD	chr6	29550515	29564732
UBD_chr6_29550515_29564732	0/0	a0007	165	1	1	0	0	0	0	copy fasta	UBD	chr6	29550515	29564732
UBE2A_chrX_119569563_119589423	1/1	a0001	152	333	80	63	145	11	32	copy fasta	UBE2A	chrX	119569563	119589423
UBE2B_chr5_134366569_134397108	1/1	a0001	152	282	88	62	86	16	28	copy fasta	UBE2B	chr5	134366569	134397108
UBE2C_chr20_45807644_45821952	1/1	a0001	179	405	96	74	175	18	40	copy fasta	UBE2C	chr20	45807644	45821952
UBE2C_chr20_45807644_45821952	0/0	a0002	179	28	0	0	22	0	6	copy fasta	UBE2C	chr20	45807644	45821952
UBE2C_chr20_45807644_45821952	0/0	a0003	179	3	0	0	3	0	0	copy fasta	UBE2C	chr20	45807644	45821952
UBE2D1_chr10_58330006_58375748	1/1	a0001	147	392	90	72	178	10	40	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D2_chr5_139556339_139633434	1/1	a0001	147	226	74	46	56	16	32	copy fasta	UBE2D2	chr5	139556339	139633434
UBE2D3_chr4_102789383_102832551	1/1	a0001	147	368	84	58	168	14	42	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D4_chr7_43921436_43961136	1/1	a0001	147	380	92	66	170	12	38	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	a0002	147	8	0	6	0	0	2	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2E1_chr3_23800955_23896640	1/1	a0001	193	358	88	70	142	12	44	copy fasta	UBE2E1	chr3	23800955	23896640
UBE2E1_chr3_23800955_23896640	0/0	a0002	193	12	0	10	0	0	2	copy fasta	UBE2E1	chr3	23800955	23896640
UBE2E2_chr3_23198327_23596794	0/0	a0001	201	336	76	64	156	10	30	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E3_chr2_180975605_181068425	1/1	a0001	207	337	96	58	123	16	42	copy fasta	UBE2E3	chr2	180975605	181068425
UBE2E3_chr2_180975605_181068425	0/0	a0002	207	1	0	0	1	0	0	copy fasta	UBE2E3	chr2	180975605	181068425
UBE2F_chr2_237962014_238047782	1/1	a0001	185	368	88	62	166	12	38	copy fasta	UBE2F	chr2	237962014	238047782
UBE2G1_chr17_4264259_4371675	1/1	a0001	170	272	88	42	106	10	24	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G2_chr21_44763580_44806820	1/1	a0001	165	368	94	68	144	18	42	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2H_chr7_129825732_129957960	1/1	a0001	183	290	84	62	92	10	40	copy fasta	UBE2H	chr7	129825732	129957960
UBE2I_chr16_1304636_1332017	1/1	a0001	158	364	96	74	132	18	42	copy fasta	UBE2I	chr16	1304636	1332017
UBE2J1_chr6_89321625_89357722	0/1	a0001	318	308	85	40	140	7	35	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	1/0	a0002	318	99	11	30	41	7	9	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	a0003	313	1	0	0	1	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	a0004	318	1	0	0	1	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	a0005	318	1	0	0	1	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J2_chr1_1248912_1278854	1/1	a0001	259	324	78	58	138	12	36	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2K_chr4_39693136_39787792	1/1	a0001	200	336	92	50	138	14	40	copy fasta	UBE2K	chr4	39693136	39787792
UBE2L3_chr22_21562714_21629034	1/1	a0001	154	352	88	54	158	12	38	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L5_chr13_30417493_30434758	1/1	a0001	154	429	94	82	187	16	48	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	a0002	154	1	0	0	1	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L6_chr11_57546662_57572672	1/1	a0001	153	367	92	72	149	16	36	copy fasta	UBE2L6	chr11	57546662	57572672
UBE2L6_chr11_57546662_57572672	0/0	a0002	153	1	0	0	1	0	0	copy fasta	UBE2L6	chr11	57546662	57572672
UBE2M_chr19_58550712_58563611	0/1	a0001	183	408	88	67	196	18	38	copy fasta	UBE2M	chr19	58550712	58563611
UBE2M_chr19_58550712_58563611	0/0	a0002	183	1	0	1	0	0	0	copy fasta	UBE2M	chr19	58550712	58563611
UBE2N_chr12_93400684_93446947	1/1	a0001	152	372	90	74	162	16	28	copy fasta	UBE2N	chr12	93400684	93446947
UBE2O_chr17_76384456_76458152	1/0	a0001	1292	222	68	34	93	4	22	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/1	a0002	1292	131	17	24	58	10	21	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	a0003	1292	4	4	0	0	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	a0004	1292	2	2	0	0	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	a0005	1292	1	1	0	0	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	a0006	1292	1	0	0	1	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	a0007	1292	1	0	0	0	0	1	copy fasta	UBE2O	chr17	76384456	76458152