JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UBE2O_chr17_76384456_76458152	0/0	a0008	1292	1	0	0	1	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	a0009	1292	1	0	0	1	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2Q1_chr1_154543577_154563662	1/1	a0001	422	363	92	68	141	18	42	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	a0002	422	2	1	0	1	0	0	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	a0003	418	1	1	0	0	0	0	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q2_chr15_75838447_75906078	1/1	a0001	375	348	78	57	163	11	37	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	a0002	375	2	0	0	2	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	a0003	375	1	1	0	0	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	a0004	375	1	0	0	0	0	1	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	a0005	375	1	0	0	0	1	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	a0006	375	1	0	1	0	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	a0007	375	1	1	0	0	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	a0008	243	1	0	0	1	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2QL1_chr5_6443859_6501723	1/1	a0001	161	340	94	76	116	12	40	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2R2_chr9_33812160_33925399	1/1	a0001	238	366	86	66	150	16	46	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2S_chr19_55394745_55412788	1/1	a0001	222	346	88	69	124	16	47	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	a0002	222	12	4	5	0	2	1	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	a0003	222	1	1	0	0	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	a0004	222	1	1	0	0	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2T_chr1_202326657_202346936	1/1	a0001	197	369	94	68	153	16	36	copy fasta	UBE2T	chr1	202326657	202346936
UBE2T_chr1_202326657_202346936	0/0	a0002	197	1	0	0	1	0	0	copy fasta	UBE2T	chr1	202326657	202346936
UBE2U_chr1_64198623_64272368	1/1	a0001	317	285	57	66	116	10	34	copy fasta	UBE2U	chr1	64198623	64272368
UBE2U_chr1_64198623_64272368	0/0	a0002	317	29	24	5	0	0	0	copy fasta	UBE2U	chr1	64198623	64272368
UBE2U_chr1_64198623_64272368	0/0	a0003	317	11	11	0	0	0	0	copy fasta	UBE2U	chr1	64198623	64272368
UBE2U_chr1_64198623_64272368	0/0	a0004	317	3	2	1	0	0	0	copy fasta	UBE2U	chr1	64198623	64272368
UBE2U_chr1_64198623_64272368	0/0	a0005	317	2	2	0	0	0	0	copy fasta	UBE2U	chr1	64198623	64272368
UBE2V1_chr20_50076124_50118150	1/1	a0001	147	397	81	70	180	18	46	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V1_chr20_50076124_50118150	0/0	a0002	147	1	1	0	0	0	0	copy fasta	UBE2V1	chr20	50076124	50118150
UBE2V2_chr8_48003431_48069708	1/1	a0001	145	242	82	48	74	8	28	copy fasta	UBE2V2	chr8	48003431	48069708
UBE2W_chr8_73781219_73883862	1/1	a0001	151	266	78	46	106	10	24	copy fasta	UBE2W	chr8	73781219	73883862
UBE2Z_chr17_48903407_48934056	1/1	a0001	354	330	88	64	126	10	40	copy fasta	UBE2Z	chr17	48903407	48934056
UBE3A_chr15_25328728_25444024	1/1	a0001	872	294	96	38	116	10	32	copy fasta	UBE3A	chr15	25328728	25444024
UBE3A_chr15_25328728_25444024	0/0	a0002	872	4	0	2	0	0	2	copy fasta	UBE3A	chr15	25328728	25444024
UBE3B_chr12_109472634_109541702	0/1	a0001	1068	177	64	32	55	10	15	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	1/0	a0002	1068	146	23	27	69	6	20	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	a0003	1068	2	0	2	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	a0004	1068	1	0	1	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	a0005	1068	1	0	0	0	0	1	copy fasta	UBE3B	chr12	109472634	109541702
UBE3B_chr12_109472634_109541702	0/0	a0006	1068	1	1	0	0	0	0	copy fasta	UBE3B	chr12	109472634	109541702
UBE3C_chr7_157133926_157274370	1/1	a0001	1083	316	86	61	132	6	29	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	a0002	1083	2	2	0	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	a0003	1083	1	0	0	1	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	a0004	1083	1	0	0	1	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	a0005	1083	1	0	1	0	0	0	copy fasta	UBE3C	chr7	157133926	157274370
UBE3C_chr7_157133926_157274370	0/0	a0006	1083	1	0	0	0	0	1	copy fasta	UBE3C	chr7	157133926	157274370
UBE3D_chr6_82887390_83070841	1/1	a0001	389	134	54	24	33	5	16	copy fasta	UBE3D	chr6	82887390	83070841
UBE3D_chr6_82887390_83070841	0/0	a0002	389	49	12	8	20	2	7	copy fasta	UBE3D	chr6	82887390	83070841
UBE3D_chr6_82887390_83070841	0/0	a0003	176	1	0	0	0	0	1	copy fasta	UBE3D	chr6	82887390	83070841
UBE3D_chr6_82887390_83070841	0/0	a0004	389	1	0	0	1	0	0	copy fasta	UBE3D	chr6	82887390	83070841
UBE3D_chr6_82887390_83070841	0/0	a0005	389	1	0	0	0	1	0	copy fasta	UBE3D	chr6	82887390	83070841