Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ACAN_chr15_88798436_88880353	0/0	a0006	2568	10	0	8	2	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0007	2530	9	0	1	8	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0008	2568	8	0	5	0	1	2	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0009	2568	7	2	1	1	1	2	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0010	2473	7	6	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0011	2587	5	2	3	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0012	2530	5	0	3	2	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0013	2568	5	0	0	5	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0014	2549	5	0	0	5	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0015	2568	4	2	0	0	1	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0016	2587	4	0	4	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0017	2378	4	4	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0018	2587	4	0	1	1	0	2	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0019	2587	3	0	0	3	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0020	2606	3	0	0	3	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0021	2587	3	0	3	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0022	2587	3	3	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0023	2568	3	2	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0024	2549	3	0	1	0	1	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0025	2397	3	3	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0026	2549	3	3	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0027	2587	3	2	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0028	2473	3	2	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0029	2473	3	0	2	0	0	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0030	2492	3	3	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0031	2549	3	0	0	3	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0032	2454	3	0	0	0	0	3	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0033	2454	3	3	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0034	2568	2	0	0	2	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0035	2568	2	0	0	1	1	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0036	2568	2	0	2	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0037	2473	2	0	1	0	0	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0038	2473	2	0	0	2	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0039	2568	2	0	0	2	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0040	2492	2	2	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0041	2454	2	2	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0042	2568	2	0	1	0	0	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0043	2549	2	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0044	2549	2	2	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0045	2530	2	0	0	2	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0046	2587	2	0	1	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0047	2568	2	0	0	2	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0048	2530	2	0	0	2	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0049	2606	2	0	0	0	2	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0050	2511	2	2	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0051	2435	2	2	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0052	2587	1	0	0	0	0	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0053	2568	1	0	0	0	0	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0054	2549	1	0	0	0	0	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0055	2587	1	0	0	0	0	1	copy fasta	ACAN	chr15	88798436	88880353