JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UBE4A_chr11_118354600_118404211	1/1	a0001	1066	314	80	45	137	16	34	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	a0002	1066	2	2	0	0	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	a0003	1066	1	1	0	0	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	a0004	1066	1	0	1	0	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	a0005	1066	1	0	0	1	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4A_chr11_118354600_118404211	0/0	a0006	1066	1	1	0	0	0	0	copy fasta	UBE4A	chr11	118354600	118404211
UBE4B_chr1_10027958_10186239	1/1	a0001	1302	181	64	32	59	4	20	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	a0002	1302	23	8	7	6	0	2	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	a0003	1302	11	9	2	0	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	a0004	1302	2	0	0	0	0	2	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	a0005	1302	2	0	0	2	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	a0006	1302	1	0	1	0	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	a0007	1302	1	0	0	1	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBE4B_chr1_10027958_10186239	0/0	a0008	1302	1	1	0	0	0	0	copy fasta	UBE4B	chr1	10027958	10186239
UBFD1_chr16_23552727_23579389	1/1	a0001	309	374	81	67	162	16	46	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	a0002	309	1	1	0	0	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBFD1_chr16_23552727_23579389	0/0	a0003	309	1	0	1	0	0	0	copy fasta	UBFD1	chr16	23552727	23579389
UBIAD1_chr1_11268198_11293434	1/1	a0001	338	361	93	62	153	9	42	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	a0002	338	1	0	0	0	1	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	a0003	338	1	1	0	0	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBIAD1_chr1_11268198_11293434	0/0	a0004	338	1	0	0	1	0	0	copy fasta	UBIAD1	chr1	11268198	11293434
UBL3_chr13_29759371_29855617	1/1	a0001	117	391	90	64	181	14	40	copy fasta	UBL3	chr13	29759371	29855617
UBL3_chr13_29759371_29855617	0/0	a0002	117	1	0	0	1	0	0	copy fasta	UBL3	chr13	29759371	29855617
UBL4A_chrX_154478717_154491615	1/1	a0001	157	305	76	60	122	11	34	copy fasta	UBL4A	chrX	154478717	154491615
UBL4A_chrX_154478717_154491615	0/0	a0002	145	1	0	0	1	0	0	copy fasta	UBL4A	chrX	154478717	154491615
UBL4B_chr1_110107443_110118947	1/1	a0001	174	392	79	70	185	14	42	copy fasta	UBL4B	chr1	110107443	110118947
UBL4B_chr1_110107443_110118947	0/0	a0002	174	2	2	0	0	0	0	copy fasta	UBL4B	chr1	110107443	110118947
UBL4B_chr1_110107443_110118947	0/0	a0003	174	1	0	0	1	0	0	copy fasta	UBL4B	chr1	110107443	110118947
UBL4B_chr1_110107443_110118947	0/0	a0004	174	1	1	0	0	0	0	copy fasta	UBL4B	chr1	110107443	110118947
UBL5_chr19_9822918_9835115	1/1	a0001	73	416	100	80	172	14	48	copy fasta	UBL5	chr19	9822918	9835115
UBL7_chr15_74440977_74466160	1/1	a0001	380	360	83	55	176	12	32	copy fasta	UBL7	chr15	74440977	74466160
UBL7_chr15_74440977_74466160	0/0	a0002	380	1	0	1	0	0	0	copy fasta	UBL7	chr15	74440977	74466160
UBL7_chr15_74440977_74466160	0/0	a0003	380	1	1	0	0	0	0	copy fasta	UBL7	chr15	74440977	74466160
UBLCP1_chr5_159258290_159291036	1/1	a0001	318	382	86	66	172	14	42	copy fasta	UBLCP1	chr5	159258290	159291036
UBN1_chr16_4842481_4887401	1/1	a0001	1134	332	84	60	138	16	32	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	a0002	1134	22	0	1	15	0	6	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	a0003	1134	8	8	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	a0004	1134	3	3	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	a0005	1134	2	0	0	0	0	2	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	a0006	1134	1	1	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	a0007	1134	1	1	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	a0008	1134	1	0	0	1	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	a0009	1134	1	0	0	1	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	a0010	1134	1	0	0	1	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	a0011	1134	1	1	0	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	a0012	1134	1	0	0	1	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	a0013	127	1	0	0	1	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN1_chr16_4842481_4887401	0/0	a0014	1134	1	0	1	0	0	0	copy fasta	UBN1	chr16	4842481	4887401
UBN2_chr7_139226237_139313236	1/1	a0001	1347	247	86	38	83	7	31	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	a0002	1347	6	0	1	5	0	0	copy fasta	UBN2	chr7	139226237	139313236