JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UBN2_chr7_139226237_139313236	0/0	a0003	1347	2	2	0	0	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	a0004	1347	1	0	0	0	0	1	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	a0005	1347	1	0	0	1	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	a0006	1347	1	0	0	0	1	0	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	a0007	1347	1	1	0	0	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	a0008	1347	1	0	1	0	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	a0009	1347	1	0	0	1	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBN2_chr7_139226237_139313236	0/0	a0010	1347	1	1	0	0	0	0	copy fasta	UBN2	chr7	139226237	139313236
UBOX5_chr20_3102573_3164865	1/1	a0001	541	364	86	74	144	12	46	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	a0002	541	10	1	5	0	4	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	a0003	541	5	4	0	0	0	1	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	a0004	541	2	2	0	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	a0005	541	1	1	0	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	a0006	541	1	0	1	0	0	0	copy fasta	UBOX5	chr20	3102573	3164865
UBOX5_chr20_3102573_3164865	0/0	a0007	541	1	0	0	0	0	1	copy fasta	UBOX5	chr20	3102573	3164865
UBP1_chr3_33383336_33445405	0/1	a0001	540	189	42	32	93	6	15	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	1/0	a0002	540	161	44	21	68	6	21	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	0/0	a0003	540	1	0	0	1	0	0	copy fasta	UBP1	chr3	33383336	33445405
UBP1_chr3_33383336_33445405	0/0	a0004	540	1	0	1	0	0	0	copy fasta	UBP1	chr3	33383336	33445405
UBQLN1_chr9_83654968_83712958	1/1	a0001	589	306	89	51	116	12	36	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	a0002	589	1	1	0	0	0	0	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN1_chr9_83654968_83712958	0/0	a0003	589	1	0	1	0	0	0	copy fasta	UBQLN1	chr9	83654968	83712958
UBQLN2_chrX_56558627_56572868	1/1	a0001	624	290	70	58	123	9	28	copy fasta	UBQLN2	chrX	56558627	56572868
UBQLN2_chrX_56558627_56572868	0/0	a0002	624	1	0	0	1	0	0	copy fasta	UBQLN2	chrX	56558627	56572868
UBQLN2_chrX_56558627_56572868	0/0	a0003	509	1	0	1	0	0	0	copy fasta	UBQLN2	chrX	56558627	56572868
UBQLN2_chrX_56558627_56572868	0/0	a0004	93	1	0	0	1	0	0	copy fasta	UBQLN2	chrX	56558627	56572868
UBQLN3_chr11_5502300_5514957	1/0	a0001	655	270	65	28	141	5	30	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	a0002	655	69	17	4	41	2	5	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/1	a0003	655	66	4	30	18	6	7	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	a0004	655	36	2	13	15	3	3	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	a0005	655	8	6	2	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	a0006	655	8	0	5	2	0	1	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	a0007	655	3	0	1	1	0	1	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	a0008	655	2	0	0	2	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	a0009	655	2	0	0	0	0	2	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	a0010	655	1	1	0	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	a0011	655	1	0	0	1	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	a0012	655	1	1	0	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	a0013	655	1	1	0	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	a0014	655	1	1	0	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	a0015	655	1	0	1	0	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	a0016	655	1	0	0	1	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	a0017	655	1	0	0	1	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	a0018	655	1	0	0	1	0	0	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN3_chr11_5502300_5514957	0/0	a0019	655	1	0	0	0	0	1	copy fasta	UBQLN3	chr11	5502300	5514957
UBQLN4_chr1_156030299_156058798	1/1	a0001	601	191	56	25	79	8	21	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLN4_chr1_156030299_156058798	0/0	a0002	601	125	30	35	29	6	25	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLN4_chr1_156030299_156058798	0/0	a0003	601	2	0	0	0	0	2	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLN4_chr1_156030299_156058798	0/0	a0004	601	2	2	0	0	0	0	copy fasta	UBQLN4	chr1	156030299	156058798
UBQLNL_chr11_5509393_5521699	0/1	a0001	475	191	34	40	73	10	33	copy fasta	UBQLNL	chr11	5509393	5521699