JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UBQLNL_chr11_5509393_5521699	0/0	a0002	475	138	12	22	89	5	10	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	a0003	475	43	5	2	33	0	3	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	a0004	475	20	0	9	9	1	1	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	1/0	a0005	475	19	17	1	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	a0006	475	9	7	2	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	a0007	475	8	8	0	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	a0008	475	7	7	0	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	a0009	475	5	1	4	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	a0010	80	4	2	2	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	a0011	475	2	0	0	2	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	a0012	475	2	0	0	1	0	1	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	a0013	475	2	2	0	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	a0014	304	2	1	1	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	a0015	475	1	0	1	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	a0016	475	1	0	0	1	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	a0017	475	1	0	0	1	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	a0018	475	1	0	1	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	a0019	475	1	0	1	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	a0020	475	1	0	0	1	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	a0021	475	1	1	0	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBQLNL_chr11_5509393_5521699	0/0	a0022	475	1	1	0	0	0	0	copy fasta	UBQLNL	chr11	5509393	5521699
UBR1_chr15_42937897_43111038	1/1	a0001	1749	252	60	31	129	5	25	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	a0002	1749	4	0	1	0	3	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	a0003	1749	3	3	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	a0004	1749	2	2	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	a0005	1749	2	2	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	a0006	1749	2	0	0	2	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	a0007	1749	2	0	0	2	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	a0008	1749	2	2	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	a0009	1749	1	1	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	a0010	1749	1	1	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	a0011	1749	1	0	1	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	a0012	1749	1	0	0	1	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	a0013	1749	1	0	0	0	0	1	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	a0014	1749	1	0	1	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR1_chr15_42937897_43111038	0/0	a0015	1749	1	1	0	0	0	0	copy fasta	UBR1	chr15	42937897	43111038
UBR2_chr6_42559029_42698505	0/0	a0001	1755	162	40	28	75	6	13	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	1/1	a0002	1755	157	39	29	64	4	19	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	a0003	1755	11	6	0	5	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	a0004	1755	3	3	0	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	a0005	1755	2	0	0	0	0	2	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	a0006	1755	1	1	0	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	a0007	1755	1	1	0	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	a0008	1755	1	0	0	1	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	a0009	1755	1	0	0	1	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	a0010	1755	1	0	0	1	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	a0011	1755	1	0	0	1	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR2_chr6_42559029_42698505	0/0	a0012	1755	1	0	1	0	0	0	copy fasta	UBR2	chr6	42559029	42698505
UBR3_chr2_169822454_170089131	1/1	a0001	1888	287	85	52	103	10	35	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	a0002	1888	32	7	1	23	0	1	copy fasta	UBR3	chr2	169822454	170089131