JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UBR3_chr2_169822454_170089131	0/0	a0003	1888	2	0	0	2	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	a0004	1888	1	0	0	1	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	a0005	1888	1	0	0	1	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR3_chr2_169822454_170089131	0/0	a0006	1888	1	0	1	0	0	0	copy fasta	UBR3	chr2	169822454	170089131
UBR4_chr1_19069510_19215266	0/1	a0001	5183	151	36	28	69	4	13	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	1/0	a0002	5183	90	20	17	32	5	15	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0003	5183	23	17	1	4	0	1	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0004	5183	21	8	11	0	1	1	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0005	5183	5	0	0	5	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0006	5183	5	0	0	5	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0007	5183	4	4	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0008	5183	2	0	0	0	0	2	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0009	5183	2	0	0	2	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0010	5183	2	0	0	2	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0011	5183	2	0	0	2	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0012	5183	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0013	5183	1	0	0	1	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0014	5183	1	0	0	0	0	1	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0015	5183	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0016	5183	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0017	5183	1	0	1	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0018	5183	1	0	0	1	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0019	5183	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0020	5183	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0021	5183	1	0	0	0	0	1	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0022	5183	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0023	5183	1	0	0	1	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0024	5183	1	0	0	1	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0025	5183	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0026	5183	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0027	5183	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0028	5183	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0029	5183	1	1	0	0	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR4_chr1_19069510_19215266	0/0	a0030	5183	1	0	0	1	0	0	copy fasta	UBR4	chr1	19069510	19215266
UBR5_chr8_102247273_102417700	1/1	a0001	2799	324	86	68	125	14	29	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	a0002	2799	1	1	0	0	0	0	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	a0003	2799	1	1	0	0	0	0	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	a0004	2799	1	0	0	0	0	1	copy fasta	UBR5	chr8	102247273	102417700
UBR5_chr8_102247273_102417700	0/0	a0005	2799	1	0	0	1	0	0	copy fasta	UBR5	chr8	102247273	102417700
UBR7_chr14_93202256_93234215	0/1	a0001	425	351	79	65	145	17	44	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	a0002	425	54	14	15	20	1	4	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	a0003	425	2	0	0	2	0	0	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	a0004	425	1	0	0	1	0	0	copy fasta	UBR7	chr14	93202256	93234215
UBR7_chr14_93202256_93234215	0/0	a0005	425	1	1	0	0	0	0	copy fasta	UBR7	chr14	93202256	93234215
UBTD1_chr10_97493924_97576206	1/1	a0001	227	314	86	66	122	10	28	copy fasta	UBTD1	chr10	97493924	97576206
UBTD2_chr5_172204646_172288764	1/1	a0001	234	374	90	72	162	12	36	copy fasta	UBTD2	chr5	172204646	172288764
UBTFL1_chr11_90080950_90092131	1/1	a0001	393	177	28	35	79	12	21	copy fasta	UBTFL1	chr11	90080950	90092131
UBTFL1_chr11_90080950_90092131	0/0	a0002	269	27	8	6	1	1	11	copy fasta	UBTFL1	chr11	90080950	90092131
UBTFL1_chr11_90080950_90092131	0/0	a0003	269	24	3	2	14	0	5	copy fasta	UBTFL1	chr11	90080950	90092131
UBTFL1_chr11_90080950_90092131	0/0	a0004	393	24	2	6	12	2	2	copy fasta	UBTFL1	chr11	90080950	90092131