JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UBTFL1_chr11_90080950_90092131	0/0	a0005	269	13	0	3	4	3	3	copy fasta	UBTFL1	chr11	90080950	90092131
UBTFL1_chr11_90080950_90092131	0/0	a0006	393	7	2	1	4	0	0	copy fasta	UBTFL1	chr11	90080950	90092131
UBTFL1_chr11_90080950_90092131	0/0	a0007	382	1	0	0	1	0	0	copy fasta	UBTFL1	chr11	90080950	90092131
UBTFL1_chr11_90080950_90092131	0/0	a0008	352	1	0	1	0	0	0	copy fasta	UBTFL1	chr11	90080950	90092131
UBTFL1_chr11_90080950_90092131	0/0	a0009	269	1	1	0	0	0	0	copy fasta	UBTFL1	chr11	90080950	90092131
UBTFL1_chr11_90080950_90092131	0/0	a0010	393	1	0	0	1	0	0	copy fasta	UBTFL1	chr11	90080950	90092131
UBTF_chr17_44200040_44224675	1/1	a0001	764	370	92	64	154	16	42	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	a0002	764	1	0	0	1	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBTF_chr17_44200040_44224675	0/0	a0003	759	1	0	0	1	0	0	copy fasta	UBTF	chr17	44200040	44224675
UBXN10_chr1_20181096_20201050	1/1	a0001	280	404	84	76	183	14	45	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	a0002	287	3	0	0	3	0	0	copy fasta	UBXN10	chr1	20181096	20201050
UBXN10_chr1_20181096_20201050	0/0	a0003	280	1	0	0	0	0	1	copy fasta	UBXN10	chr1	20181096	20201050
UBXN11_chr1_26277282_26311636	0/0	a0000	0	3	0	0	3	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0001	512	130	30	32	47	9	12	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0002	528	72	6	5	56	0	5	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/1	a0003	510	67	20	11	25	1	9	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0004	512	22	6	4	1	6	5	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0005	536	21	0	10	11	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0006	512	7	1	0	5	0	1	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	1/0	a0007	520	7	2	0	2	0	2	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0008	510	7	6	1	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0009	512	5	0	0	5	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0010	512	4	4	0	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0011	516	3	0	0	3	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0012	520	2	1	1	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0013	510	2	0	2	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0014	504	2	2	0	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0015	508	2	2	0	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0016	510	1	1	0	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0017	512	1	0	1	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0018	518	1	0	1	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0019	510	1	0	1	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0020	548	1	0	1	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0021	528	1	0	0	0	0	1	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0022	534	1	0	1	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0023	534	1	0	0	1	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0024	526	1	0	0	1	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0025	528	1	0	0	0	0	1	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0026	504	1	1	0	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0027	512	1	1	0	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0028	510	1	1	0	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN11_chr1_26277282_26311636	0/0	a0029	512	1	0	1	0	0	0	copy fasta	UBXN11	chr1	26277282	26311636
UBXN1_chr11_62671500_62684073	1/1	a0001	297	325	90	70	116	10	37	copy fasta	UBXN1	chr11	62671500	62684073
UBXN1_chr11_62671500_62684073	0/0	a0002	297	2	2	0	0	0	0	copy fasta	UBXN1	chr11	62671500	62684073
UBXN1_chr11_62671500_62684073	0/0	a0003	297	2	0	0	2	0	0	copy fasta	UBXN1	chr11	62671500	62684073
UBXN1_chr11_62671500_62684073	0/0	a0004	297	2	0	0	2	0	0	copy fasta	UBXN1	chr11	62671500	62684073
UBXN1_chr11_62671500_62684073	0/0	a0005	297	1	0	0	0	0	1	copy fasta	UBXN1	chr11	62671500	62684073
UBXN2A_chr2_23935463_24009909	1/1	a0001	259	246	67	54	74	16	33	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	a0002	259	1	0	0	0	0	1	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	a0003	259	1	1	0	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909