JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UBXN2A_chr2_23935463_24009909	0/0	a0004	259	1	1	0	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2A_chr2_23935463_24009909	0/0	a0005	259	1	1	0	0	0	0	copy fasta	UBXN2A	chr2	23935463	24009909
UBXN2B_chr8_58406361_58456501	1/1	a0001	331	406	84	68	197	14	41	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	a0002	331	4	4	0	0	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	a0003	331	2	2	0	0	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	a0004	144	1	0	0	1	0	0	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN2B_chr8_58406361_58456501	0/0	a0005	331	1	0	0	0	0	1	copy fasta	UBXN2B	chr8	58406361	58456501
UBXN4_chr2_135736855_135790056	1/1	a0001	508	367	86	64	173	6	36	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	a0002	508	2	0	0	2	0	0	copy fasta	UBXN4	chr2	135736855	135790056
UBXN4_chr2_135736855_135790056	0/0	a0003	508	1	0	0	1	0	0	copy fasta	UBXN4	chr2	135736855	135790056
UBXN6_chr19_4440006_4462794	1/1	a0001	441	340	80	52	157	12	37	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	a0002	441	62	9	30	8	5	10	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	a0003	441	6	6	0	0	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	a0004	441	2	0	0	2	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	a0005	441	2	2	0	0	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	a0006	441	1	1	0	0	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	a0007	441	1	1	0	0	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	a0008	441	1	0	0	0	1	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	a0009	441	1	0	0	1	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	a0010	441	1	0	0	1	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	a0011	441	1	0	0	0	0	1	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	a0012	441	1	1	0	0	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN6_chr19_4440006_4462794	0/0	a0013	441	1	0	0	1	0	0	copy fasta	UBXN6	chr19	4440006	4462794
UBXN7_chr3_196342662_196437427	1/1	a0001	489	273	92	56	74	16	33	copy fasta	UBXN7	chr3	196342662	196437427
UBXN7_chr3_196342662_196437427	0/0	a0002	489	1	0	0	0	0	1	copy fasta	UBXN7	chr3	196342662	196437427
UBXN8_chr8_30739164_30772006	0/1	a0001	270	260	78	56	95	8	22	copy fasta	UBXN8	chr8	30739164	30772006
UBXN8_chr8_30739164_30772006	0/0	a0002	270	10	10	0	0	0	0	copy fasta	UBXN8	chr8	30739164	30772006
UBXN8_chr8_30739164_30772006	0/0	a0003	270	2	2	0	0	0	0	copy fasta	UBXN8	chr8	30739164	30772006
UBXN8_chr8_30739164_30772006	0/0	a0004	270	1	0	0	1	0	0	copy fasta	UBXN8	chr8	30739164	30772006
UBXN8_chr8_30739164_30772006	1/0	a0005	270	1	0	0	0	0	0	copy fasta	UBXN8	chr8	30739164	30772006
UCHL1_chr4_41251928_41273455	1/1	a0001	223	311	94	55	118	13	29	copy fasta	UCHL1	chr4	41251928	41273455
UCHL1_chr4_41251928_41273455	0/0	a0002	223	112	2	19	79	1	11	copy fasta	UCHL1	chr4	41251928	41273455
UCHL1_chr4_41251928_41273455	0/0	a0003	223	1	0	0	1	0	0	copy fasta	UCHL1	chr4	41251928	41273455
UCHL3_chr13_75544791_75611020	1/1	a0001	230	325	92	66	119	8	38	copy fasta	UCHL3	chr13	75544791	75611020
UCHL3_chr13_75544791_75611020	0/0	a0002	230	1	0	0	1	0	0	copy fasta	UCHL3	chr13	75544791	75611020
UCHL5_chr1_193007254_193064360	1/1	a0001	328	307	78	45	140	12	30	copy fasta	UCHL5	chr1	193007254	193064360
UCHL5_chr1_193007254_193064360	0/0	a0002	328	1	0	1	0	0	0	copy fasta	UCHL5	chr1	193007254	193064360
UCK1_chr9_131518801_131536263	1/1	a0001	277	422	96	76	182	18	48	copy fasta	UCK1	chr9	131518801	131536263
UCK1_chr9_131518801_131536263	0/0	a0002	277	2	2	0	0	0	0	copy fasta	UCK1	chr9	131518801	131536263
UCK2_chr1_165822614_165916618	0/0	a0001	261	319	89	62	120	14	34	copy fasta	UCK2	chr1	165822614	165916618
UCK2_chr1_165822614_165916618	0/0	a0002	261	1	1	0	0	0	0	copy fasta	UCK2	chr1	165822614	165916618
UCKL1_chr20_63934829_63961416	1/1	a0001	548	354	96	72	122	14	48	copy fasta	UCKL1	chr20	63934829	63961416
UCKL1_chr20_63934829_63961416	0/0	a0002	548	1	0	0	1	0	0	copy fasta	UCKL1	chr20	63934829	63961416
UCKL1_chr20_63934829_63961416	0/0	a0003	215	1	0	0	1	0	0	copy fasta	UCKL1	chr20	63934829	63961416
UCMA_chr10_13216766_13239374	1/1	a0001	138	458	91	84	219	18	44	copy fasta	UCMA	chr10	13216766	13239374
UCMA_chr10_13216766_13239374	0/0	a0002	70	2	2	0	0	0	0	copy fasta	UCMA	chr10	13216766	13239374
UCMA_chr10_13216766_13239374	0/0	a0003	138	1	0	0	1	0	0	copy fasta	UCMA	chr10	13216766	13239374
UCMA_chr10_13216766_13239374	0/0	a0004	138	1	1	0	0	0	0	copy fasta	UCMA	chr10	13216766	13239374
UCMA_chr10_13216766_13239374	0/0	a0005	138	1	1	0	0	0	0	copy fasta	UCMA	chr10	13216766	13239374
UCMA_chr10_13216766_13239374	0/0	a0006	138	1	1	0	0	0	0	copy fasta	UCMA	chr10	13216766	13239374