JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UCN2_chr3_48556718_48568781	1/1	a0001	112	301	80	75	100	12	32	copy fasta	UCN2	chr3	48556718	48568781
UCN2_chr3_48556718_48568781	0/0	a0002	112	1	0	1	0	0	0	copy fasta	UCN2	chr3	48556718	48568781
UCN3_chr10_5359966_5379692	0/1	a0001	161	233	29	42	129	5	27	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	1/0	a0002	161	233	63	41	98	11	19	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	a0003	161	1	0	0	1	0	0	copy fasta	UCN3	chr10	5359966	5379692
UCN3_chr10_5359966_5379692	0/0	a0004	161	1	0	1	0	0	0	copy fasta	UCN3	chr10	5359966	5379692
UCN_chr2_27302400_27313445	1/1	a0001	124	320	90	70	106	12	40	copy fasta	UCN	chr2	27302400	27313445
UCN_chr2_27302400_27313445	0/0	a0002	124	1	0	0	1	0	0	copy fasta	UCN	chr2	27302400	27313445
UCN_chr2_27302400_27313445	0/0	a0003	124	1	0	0	1	0	0	copy fasta	UCN	chr2	27302400	27313445
UCP1_chr4_140554431_140573961	1/1	a0001	307	383	91	63	187	9	31	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	a0002	307	32	0	9	16	1	6	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	a0003	307	4	4	0	0	0	0	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	a0004	307	2	0	0	2	0	0	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	a0005	307	1	0	0	1	0	0	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	a0006	307	1	0	0	0	0	1	copy fasta	UCP1	chr4	140554431	140573961
UCP1_chr4_140554431_140573961	0/0	a0007	307	1	1	0	0	0	0	copy fasta	UCP1	chr4	140554431	140573961
UCP2_chr11_73969672_73987843	0/0	a0001	309	208	44	37	103	9	15	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	1/1	a0002	309	204	49	39	80	7	27	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	a0003	309	2	2	0	0	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	a0004	309	2	0	0	2	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	a0005	309	1	1	0	0	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	a0006	309	1	0	0	1	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	a0007	309	1	0	0	1	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP2_chr11_73969672_73987843	0/0	a0008	309	1	0	0	1	0	0	copy fasta	UCP2	chr11	73969672	73987843
UCP3_chr11_73995277_74014085	1/1	a0001	312	417	77	76	201	16	45	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	a0002	312	14	14	0	0	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	a0003	312	3	2	1	0	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	a0004	312	2	0	0	2	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	a0005	312	2	2	0	0	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	a0006	312	1	1	0	0	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	a0007	312	1	1	0	0	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	a0008	312	1	0	0	1	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	a0009	312	1	0	0	1	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	a0010	142	1	0	0	0	0	1	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	a0011	312	1	0	0	1	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	a0012	312	1	0	1	0	0	0	copy fasta	UCP3	chr11	73995277	74014085
UCP3_chr11_73995277_74014085	0/0	a0013	312	1	1	0	0	0	0	copy fasta	UCP3	chr11	73995277	74014085
UEVLD_chr11_18524609_18593734	1/1	a0001	471	386	86	70	182	10	36	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	a0002	471	9	8	0	1	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	a0003	471	1	1	0	0	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	a0004	471	1	0	1	0	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	a0005	471	1	1	0	0	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	a0006	471	1	0	1	0	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UEVLD_chr11_18524609_18593734	0/0	a0007	471	1	0	0	1	0	0	copy fasta	UEVLD	chr11	18524609	18593734
UFC1_chr1_161148978_161163856	1/1	a0001	167	368	78	58	182	16	32	copy fasta	UFC1	chr1	161148978	161163856
UFD1_chr22_19444911_19484193	1/1	a0001	307	393	85	65	200	12	29	copy fasta	UFD1	chr22	19444911	19484193
UFD1_chr22_19444911_19484193	0/0	a0002	307	8	4	3	0	0	1	copy fasta	UFD1	chr22	19444911	19484193
UFD1_chr22_19444911_19484193	0/0	a0003	307	1	1	0	0	0	0	copy fasta	UFD1	chr22	19444911	19484193
UFL1_chr6_96516806_96560276	1/1	a0001	794	360	80	64	161	14	39	copy fasta	UFL1	chr6	96516806	96560276
UFL1_chr6_96516806_96560276	0/0	a0002	794	6	0	0	6	0	0	copy fasta	UFL1	chr6	96516806	96560276