JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UGGT2_chr13_95796580_96058401	0/0	a0013	1516	1	0	0	0	0	1	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	a0014	439	1	1	0	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	a0015	1516	1	0	0	0	0	1	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	a0016	1516	1	0	0	0	0	1	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	a0017	1516	1	0	0	1	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	a0018	1516	1	0	0	1	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	a0019	1516	1	0	1	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	a0020	1516	1	0	0	0	0	1	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	a0021	1516	1	0	1	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	a0022	1516	1	1	0	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	a0023	1516	1	1	0	0	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGGT2_chr13_95796580_96058401	0/0	a0024	1516	1	0	0	1	0	0	copy fasta	UGGT2	chr13	95796580	96058401
UGP2_chr2_63836896_63896560	1/1	a0001	508	332	94	74	104	16	42	copy fasta	UGP2	chr2	63836896	63896560
UGP2_chr2_63836896_63896560	0/0	a0002	508	2	0	0	0	2	0	copy fasta	UGP2	chr2	63836896	63896560
UGT1A10_chr2_233631448_233778300	1/1	a0001	530	281	78	50	98	12	41	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	a0002	530	5	5	0	0	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	a0003	530	4	4	0	0	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	a0004	530	2	0	0	2	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	a0005	530	2	0	0	2	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	a0006	530	2	0	0	2	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	a0007	530	1	1	0	0	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	a0008	530	1	0	1	0	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	a0009	530	1	0	0	1	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	a0010	530	1	0	0	1	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	a0011	530	1	0	1	0	0	0	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A10_chr2_233631448_233778300	0/0	a0012	530	1	0	0	0	0	1	copy fasta	UGT1A10	chr2	233631448	233778300
UGT1A1_chr2_233755270_233778300	1/1	a0001	533	379	96	64	154	17	46	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A1_chr2_233755270_233778300	0/0	a0002	533	25	0	0	23	1	1	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A1_chr2_233755270_233778300	0/0	a0003	533	2	0	0	2	0	0	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A1_chr2_233755270_233778300	0/0	a0004	533	2	0	0	2	0	0	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A1_chr2_233755270_233778300	0/0	a0005	533	1	0	1	0	0	0	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A1_chr2_233755270_233778300	0/0	a0006	533	1	0	1	0	0	0	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A1_chr2_233755270_233778300	0/0	a0007	533	1	0	0	0	0	1	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A1_chr2_233755270_233778300	0/0	a0008	533	1	0	0	1	0	0	copy fasta	UGT1A1	chr2	233755270	233778300
UGT1A3_chr2_233724042_233778300	1/1	a0001	534	136	14	21	70	9	20	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	a0002	534	127	52	22	28	5	20	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	a0003	534	37	7	10	14	1	5	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	a0004	534	11	0	0	11	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	a0005	534	8	3	1	2	1	1	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	a0006	534	7	7	0	0	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	a0007	534	6	0	0	6	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	a0008	534	5	5	0	0	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	a0009	534	4	4	0	0	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	a0010	534	2	0	0	2	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	a0011	534	2	0	0	2	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	a0012	534	1	1	0	0	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	a0013	534	1	0	0	0	0	1	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	a0014	534	1	0	0	0	0	1	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	a0015	534	1	1	0	0	0	0	copy fasta	UGT1A3	chr2	233724042	233778300
UGT1A3_chr2_233724042_233778300	0/0	a0016	534	1	0	0	1	0	0	copy fasta	UGT1A3	chr2	233724042	233778300