JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UGT1A4_chr2_233713736_233778300	1/1	a0001	534	249	68	39	90	16	34	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	a0002	534	48	10	8	22	0	8	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	a0003	534	12	12	0	0	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	a0004	534	7	5	0	2	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	a0005	534	4	0	3	0	0	1	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	a0006	534	2	0	0	2	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	a0007	534	2	0	0	2	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	a0008	534	1	0	0	1	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	a0009	534	1	0	0	1	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	a0010	534	1	0	0	0	0	1	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	a0011	534	1	1	0	0	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	a0012	534	1	0	0	1	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	a0013	97	1	0	0	1	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	a0014	534	1	1	0	0	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A4_chr2_233713736_233778300	0/0	a0015	534	1	1	0	0	0	0	copy fasta	UGT1A4	chr2	233713736	233778300
UGT1A5_chr2_233707907_233778300	1/1	a0001	534	272	87	42	91	15	35	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A5_chr2_233707907_233778300	0/0	a0002	534	52	11	8	24	1	8	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A5_chr2_233707907_233778300	0/0	a0003	534	2	0	0	2	0	0	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A5_chr2_233707907_233778300	0/0	a0004	534	2	0	0	2	0	0	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A5_chr2_233707907_233778300	0/0	a0005	534	1	0	0	1	0	0	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A5_chr2_233707907_233778300	0/0	a0006	534	1	0	0	0	0	1	copy fasta	UGT1A5	chr2	233707907	233778300
UGT1A6_chr2_233687890_233778300	1/1	a0001	532	217	65	33	87	7	23	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	a0002	532	88	22	13	29	7	17	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	a0003	532	11	7	3	0	0	1	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	a0004	532	8	3	1	2	0	2	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	a0005	532	2	0	0	2	0	0	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	a0006	532	2	0	0	2	0	0	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	a0007	532	1	0	1	0	0	0	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	a0008	532	1	0	0	0	0	1	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	a0009	532	1	0	1	0	0	0	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A6_chr2_233687890_233778300	0/0	a0010	532	1	1	0	0	0	0	copy fasta	UGT1A6	chr2	233687890	233778300
UGT1A7_chr2_233676901_233778300	1/1	a0001	530	129	34	18	58	5	12	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	a0002	530	90	18	17	30	6	19	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	a0003	530	86	35	11	27	2	11	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	a0004	530	5	4	0	0	1	0	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	a0005	530	2	0	0	2	0	0	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	a0006	530	2	2	0	0	0	0	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	a0007	530	1	0	0	1	0	0	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	a0008	530	1	0	0	0	0	1	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	a0009	530	1	0	1	0	0	0	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	a0010	530	1	1	0	0	0	0	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	a0011	530	1	0	0	0	0	1	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A7_chr2_233676901_233778300	0/0	a0012	87	1	0	1	0	0	0	copy fasta	UGT1A7	chr2	233676901	233778300
UGT1A8_chr2_233612633_233778300	1/0	a0001	530	209	84	31	53	8	32	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/1	a0002	530	67	1	13	41	2	9	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	a0003	530	5	0	5	0	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	a0004	530	2	0	0	2	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	a0005	530	2	0	0	2	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	a0006	530	2	2	0	0	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	a0007	530	1	0	1	0	0	0	copy fasta	UGT1A8	chr2	233612633	233778300