JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BRAF_chr7_140714337_140929929	0/0	a0003	785	1	1	0	0	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140725665_140929929	1/1	a0001	766	194	82	32	46	4	28	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	a0002	766	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	a0003	744	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAP_chr12_111637146_111690956	1/1	a0001	592	363	90	61	160	8	42	copy fasta	BRAP	chr12	111637146	111690956
BRAP_chr12_111637146_111690956	0/0	a0002	592	1	0	1	0	0	0	copy fasta	BRAP	chr12	111637146	111690956
BRAT1_chr7_2532810_2560524	1/0	a0001	821	297	65	50	143	10	28	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	a0002	821	56	0	6	42	0	8	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/1	a0003	821	26	0	19	1	3	2	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	a0004	821	8	8	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	a0005	821	6	0	0	6	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	a0006	821	6	5	1	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	a0007	821	5	5	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	a0008	821	5	5	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	a0009	821	3	3	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	a0010	821	1	1	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	a0011	821	1	1	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	a0012	821	1	0	0	0	0	1	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	a0013	821	1	1	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	a0014	821	1	0	0	1	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	a0015	821	1	0	1	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	a0016	821	1	1	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	a0017	821	1	1	0	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	a0018	821	1	0	0	1	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	a0019	821	1	0	0	0	1	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	a0020	821	1	0	1	0	0	0	copy fasta	BRAT1	chr7	2532810	2560524
BRAT1_chr7_2532810_2560524	0/0	a0021	821	1	0	0	0	0	1	copy fasta	BRAT1	chr7	2532810	2560524
BRCA1_chr17_43039295_43130364	0/1	a0001	1863	97	20	13	49	3	11	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	1/0	a0002	1863	86	10	17	43	5	10	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	a0003	1863	58	52	4	0	0	2	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	a0004	1863	9	0	5	0	1	3	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	a0005	1863	6	0	5	0	0	1	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	a0006	1863	3	3	0	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	a0007	1863	2	0	0	0	1	1	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	a0008	1863	2	0	0	2	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	a0009	1863	1	0	0	1	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	a0010	1863	1	0	0	1	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	a0011	1863	1	1	0	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	a0012	1863	1	1	0	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	a0013	1863	1	1	0	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	a0014	1863	1	0	0	1	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	a0015	1863	1	0	1	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	a0016	1863	1	0	1	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	a0017	1863	1	0	0	0	0	1	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	a0018	1863	1	1	0	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	a0019	1863	1	0	0	0	0	1	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	a0020	1863	1	1	0	0	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA1_chr17_43039295_43130364	0/0	a0021	19	1	0	0	1	0	0	copy fasta	BRCA1	chr17	43039295	43130364
BRCA2_chr13_32310508_32405268	0/0	a0001	3418	202	45	36	91	7	23	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/1	a0002	3418	72	3	13	40	4	11	copy fasta	BRCA2	chr13	32310508	32405268