JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UGT1A8_chr2_233612633_233778300	0/0	a0008	530	1	0	0	0	0	1	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A8_chr2_233612633_233778300	0/0	a0009	530	1	1	0	0	0	0	copy fasta	UGT1A8	chr2	233612633	233778300
UGT1A9_chr2_233666898_233778300	1/1	a0001	530	307	92	48	107	16	42	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	a0002	530	2	0	0	2	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	a0003	530	1	0	0	1	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	a0004	530	1	0	1	0	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	a0005	241	1	0	0	1	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	a0006	530	1	0	0	1	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	a0007	530	1	0	1	0	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	a0008	530	1	0	0	0	0	1	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	a0009	530	1	0	0	1	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	a0010	530	1	0	0	0	0	1	copy fasta	UGT1A9	chr2	233666898	233778300
UGT1A9_chr2_233666898_233778300	0/0	a0011	41	1	0	0	1	0	0	copy fasta	UGT1A9	chr2	233666898	233778300
UGT2A1_chr4_69583417_69658247	1/1	a0001	527	289	47	48	156	9	27	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	a0002	527	33	23	4	4	1	1	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	a0003	527	21	2	7	5	1	6	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	a0004	527	18	1	10	0	3	4	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	a0005	527	6	6	0	0	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	a0006	191	3	0	3	0	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	a0007	527	1	1	0	0	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	a0008	527	1	1	0	0	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	a0009	527	1	1	0	0	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	a0010	527	1	0	1	0	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	a0011	527	1	0	1	0	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A1_chr4_69583417_69658247	0/0	a0012	527	1	0	0	1	0	0	copy fasta	UGT2A1	chr4	69583417	69658247
UGT2A2_chr4_69583417_69644642	1/1	a0001	536	314	62	58	151	8	33	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	a0002	536	26	8	6	5	1	6	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	a0003	536	16	2	2	6	4	2	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	a0004	536	6	0	3	1	1	1	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	a0005	536	3	3	0	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	a0006	536	2	2	0	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	a0007	536	2	0	0	2	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	a0008	536	1	1	0	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	a0009	536	1	1	0	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	a0010	536	1	1	0	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	a0011	536	1	1	0	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	a0012	536	1	0	1	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	a0013	536	1	0	1	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	a0014	536	1	0	0	1	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	a0015	536	1	0	1	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A2_chr4_69583417_69644642	0/0	a0016	536	1	1	0	0	0	0	copy fasta	UGT2A2	chr4	69583417	69644642
UGT2A3_chr4_68923463_68956804	0/1	a0001	527	277	45	44	147	7	33	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	a0002	527	166	41	32	80	4	9	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	a0003	527	5	4	1	0	0	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	a0004	527	4	1	2	0	1	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	a0005	527	3	3	0	0	0	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	a0006	527	1	0	0	0	0	1	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	a0007	527	1	0	1	0	0	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	a0008	527	1	0	0	1	0	0	copy fasta	UGT2A3	chr4	68923463	68956804
UGT2A3_chr4_68923463_68956804	0/0	a0009	527	1	0	0	0	0	1	copy fasta	UGT2A3	chr4	68923463	68956804