JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UGT2B10_chr4_68810994_68837023	0/1	a0001	528	399	69	62	210	15	42	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	a0002	528	17	0	7	10	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	a0003	528	10	4	3	1	1	1	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	a0004	528	7	0	0	7	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	a0005	404	6	6	0	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	a0006	528	4	3	1	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	a0007	528	4	1	0	0	0	3	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	a0008	528	3	3	0	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	a0009	528	2	2	0	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	a0010	528	2	2	0	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	a0011	528	1	1	0	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	a0012	528	1	0	1	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	a0013	528	1	0	0	1	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	a0014	528	1	1	0	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	a0015	528	1	0	0	1	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	a0016	528	1	1	0	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B10_chr4_68810994_68837023	0/0	a0017	528	1	1	0	0	0	0	copy fasta	UGT2B10	chr4	68810994	68837023
UGT2B11_chr4_69194951_69219748	1/1	a0001	529	297	48	45	164	13	25	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	a0002	529	71	23	15	23	0	10	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	a0003	529	7	0	0	7	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	a0004	529	5	0	4	0	1	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	a0005	529	3	0	3	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	a0006	529	3	3	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	a0007	529	3	3	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	a0008	529	3	3	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	a0009	529	3	1	2	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	a0010	529	2	2	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	a0011	529	2	2	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	a0012	292	2	0	0	2	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	a0013	529	2	2	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	a0014	529	1	1	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	a0015	529	1	0	0	1	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	a0016	529	1	1	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	a0017	529	1	0	1	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	a0018	529	1	1	0	0	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	a0019	385	1	0	0	1	0	0	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B11_chr4_69194951_69219748	0/0	a0020	529	1	0	0	0	0	1	copy fasta	UGT2B11	chr4	69194951	69219748
UGT2B15_chr4_68641597_68675652	0/0	a0001	530	155	38	17	91	0	9	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	a0002	530	136	34	16	72	4	10	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	a0003	530	65	9	26	15	6	9	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/1	a0004	530	61	2	10	23	7	18	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	a0005	530	3	3	0	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	a0006	517	2	1	1	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	a0007	530	2	2	0	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	a0008	530	1	0	1	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	a0009	530	1	0	1	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	a0010	530	1	1	0	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	a0011	530	1	1	0	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	a0012	530	1	0	1	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	a0013	530	1	0	1	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652