JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UGT2B15_chr4_68641597_68675652	0/0	a0014	530	1	1	0	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	a0015	530	1	0	0	0	1	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	a0016	517	1	1	0	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	a0017	530	1	1	0	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	a0018	530	1	1	0	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	a0019	530	1	0	0	1	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B15_chr4_68641597_68675652	0/0	a0020	530	1	1	0	0	0	0	copy fasta	UGT2B15	chr4	68641597	68675652
UGT2B17_chr4_68532173_68581322	1/1	a0001	530	56	35	11	2	2	4	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	0/0	a0002	530	5	4	1	0	0	0	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	0/0	a0003	530	2	2	0	0	0	0	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	0/0	a0004	530	1	1	0	0	0	0	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	0/0	a0005	530	1	1	0	0	0	0	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B17_chr4_68532173_68581322	0/0	a0006	530	1	1	0	0	0	0	copy fasta	UGT2B17	chr4	68532173	68581322
UGT2B28_chr4_69275475_69300050	0/0	a0001	529	102	14	19	54	6	9	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	1/0	a0002	529	90	16	12	49	4	8	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	a0003	529	49	5	9	32	1	2	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	a0004	529	7	0	4	0	2	1	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	a0005	529	4	4	0	0	0	0	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	a0006	529	2	2	0	0	0	0	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	a0007	529	1	0	0	1	0	0	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	a0008	529	1	1	0	0	0	0	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	a0009	529	1	0	0	1	0	0	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	a0010	529	1	0	0	0	1	0	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B28_chr4_69275475_69300050	0/0	a0011	332	1	0	0	1	0	0	copy fasta	UGT2B28	chr4	69275475	69300050
UGT2B4_chr4_69475165_69500905	1/1	a0001	528	395	85	58	201	8	41	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	a0002	528	24	5	12	0	6	1	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	a0003	528	3	3	0	0	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	a0004	528	2	2	0	0	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	a0005	528	2	0	0	0	2	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	a0006	528	2	2	0	0	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	a0007	526	1	0	1	0	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	a0008	528	1	0	1	0	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	a0009	528	1	0	1	0	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	a0010	528	1	0	0	1	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	a0011	528	1	0	0	1	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	a0012	528	1	0	0	1	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	a0013	528	1	1	0	0	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B4_chr4_69475165_69500905	0/0	a0014	528	1	0	1	0	0	0	copy fasta	UGT2B4	chr4	69475165	69500905
UGT2B7_chr4_69091474_69117987	0/1	a0001	529	256	60	53	106	8	28	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	1/0	a0002	529	127	22	22	58	6	18	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	a0003	529	30	0	2	28	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	a0004	529	5	5	0	0	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	a0005	529	2	0	0	2	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	a0006	529	1	1	0	0	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	a0007	529	1	0	0	1	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	a0008	529	1	0	0	1	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT2B7_chr4_69091474_69117987	0/0	a0009	529	1	0	1	0	0	0	copy fasta	UGT2B7	chr4	69091474	69117987
UGT3A1_chr5_35946006_35996390	1/1	a0001	523	306	87	54	123	12	28	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	a0002	523	75	3	8	47	2	15	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	a0003	523	8	0	0	8	0	0	copy fasta	UGT3A1	chr5	35946006	35996390