JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UGT3A1_chr5_35946006_35996390	0/0	a0004	523	4	0	0	4	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	a0005	399	1	0	0	1	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	a0006	523	1	0	0	0	0	1	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	a0007	523	1	1	0	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	a0008	523	1	1	0	0	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A1_chr5_35946006_35996390	0/0	a0009	523	1	0	0	1	0	0	copy fasta	UGT3A1	chr5	35946006	35996390
UGT3A2_chr5_36030021_36071882	1/1	a0001	523	402	85	76	187	14	38	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	a0002	523	3	2	1	0	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	a0003	523	2	1	0	1	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	a0004	523	1	0	1	0	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	a0005	523	1	1	0	0	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT3A2_chr5_36030021_36071882	0/0	a0006	523	1	1	0	0	0	0	copy fasta	UGT3A2	chr5	36030021	36071882
UGT8_chr4_114593807_114683225	0/1	a0001	541	233	81	48	72	12	19	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	a0002	541	36	0	4	26	2	4	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	a0003	541	4	0	4	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	1/0	a0004	541	3	2	0	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	a0005	541	1	1	0	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	a0006	541	1	0	0	0	0	1	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	a0007	541	1	1	0	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UGT8_chr4_114593807_114683225	0/0	a0008	541	1	1	0	0	0	0	copy fasta	UGT8	chr4	114593807	114683225
UHMK1_chr1_162492818_162534631	1/1	a0001	419	410	88	70	198	13	39	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	a0002	419	1	0	0	0	0	1	copy fasta	UHMK1	chr1	162492818	162534631
UHMK1_chr1_162492818_162534631	0/0	a0003	419	1	0	0	0	1	0	copy fasta	UHMK1	chr1	162492818	162534631
UHRF1_chr19_4904501_4967154	1/1	a0001	793	272	81	57	85	9	38	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	a0002	793	35	5	19	2	3	6	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	a0003	793	3	3	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	a0004	793	1	0	0	0	0	1	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	a0005	793	1	1	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	a0006	793	1	1	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	a0007	793	1	0	0	0	0	1	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	a0008	793	1	0	0	1	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF1_chr19_4904501_4967154	0/0	a0009	793	1	1	0	0	0	0	copy fasta	UHRF1	chr19	4904501	4967154
UHRF2_chr9_6408199_6512054	1/1	a0001	802	318	88	58	126	10	34	copy fasta	UHRF2	chr9	6408199	6512054
UIMC1_chr5_176900006_177011779	1/1	a0001	719	212	36	40	103	9	22	copy fasta	UIMC1	chr5	176900006	177011779
UIMC1_chr5_176900006_177011779	0/0	a0002	719	53	2	11	33	3	4	copy fasta	UIMC1	chr5	176900006	177011779
UIMC1_chr5_176900006_177011779	0/0	a0003	719	50	30	7	5	2	6	copy fasta	UIMC1	chr5	176900006	177011779
UIMC1_chr5_176900006_177011779	0/0	a0004	719	14	14	0	0	0	0	copy fasta	UIMC1	chr5	176900006	177011779
UIMC1_chr5_176900006_177011779	0/0	a0005	719	1	0	0	1	0	0	copy fasta	UIMC1	chr5	176900006	177011779
ULBP1_chr6_149958943_149978715	1/1	a0001	244	415	80	73	196	16	48	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	a0002	244	11	10	1	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	a0003	244	4	4	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	a0004	244	3	0	0	3	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	a0005	244	2	0	0	0	0	2	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	a0006	244	2	0	0	2	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	a0007	244	1	1	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	a0008	244	1	1	0	0	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP1_chr6_149958943_149978715	0/0	a0009	244	1	0	0	1	0	0	copy fasta	ULBP1	chr6	149958943	149978715
ULBP2_chr6_149937014_149954235	1/1	a0001	246	317	66	65	138	12	34	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	a0002	246	89	3	6	70	0	10	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	a0003	246	24	20	1	2	0	1	copy fasta	ULBP2	chr6	149937014	149954235