JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ULBP2_chr6_149937014_149954235	0/0	a0004	246	6	6	0	0	0	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	a0005	246	4	0	0	4	0	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	a0006	246	2	2	0	0	0	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	a0007	246	1	0	0	0	0	1	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	a0008	246	1	1	0	0	0	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	a0009	246	1	1	0	0	0	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP2_chr6_149937014_149954235	0/0	a0010	246	1	1	0	0	0	0	copy fasta	ULBP2	chr6	149937014	149954235
ULBP3_chr6_150056053_150074121	1/1	a0001	244	400	84	71	192	13	38	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	a0002	244	28	1	8	11	4	4	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	a0003	17	13	0	3	7	1	2	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	a0004	109	9	8	1	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	a0005	244	2	0	0	0	0	2	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	a0006	244	2	1	1	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	a0007	244	1	1	0	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	a0008	244	1	0	0	1	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	a0009	244	1	0	0	1	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULBP3_chr6_150056053_150074121	0/0	a0010	244	1	1	0	0	0	0	copy fasta	ULBP3	chr6	150056053	150074121
ULK1_chr12_131889622_131928150	0/1	a0001	1050	289	85	44	120	10	29	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	a0002	1050	43	10	16	5	3	9	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	a0003	1050	2	2	0	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	a0004	1050	1	0	0	0	1	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	a0005	1050	1	0	0	1	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	a0006	1050	1	0	1	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	a0007	1050	1	1	0	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	a0008	1044	1	1	0	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	a0009	1050	1	0	0	1	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	1/0	a0010	1050	1	0	0	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	a0011	1050	1	1	0	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	a0012	1050	1	0	1	0	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK1_chr12_131889622_131928150	0/0	a0013	1061	1	0	0	1	0	0	copy fasta	ULK1	chr12	131889622	131928150
ULK2_chr17_19765830_19872936	0/1	a0001	1036	225	62	32	101	9	20	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	1/0	a0002	1036	51	3	3	38	0	6	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	a0003	1036	4	4	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	a0004	1036	3	0	0	3	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	a0005	1036	2	0	1	0	1	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	a0006	1036	1	0	0	1	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	a0007	1036	1	0	0	1	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK2_chr17_19765830_19872936	0/0	a0008	1036	1	1	0	0	0	0	copy fasta	ULK2	chr17	19765830	19872936
ULK3_chr15_74831118_74848156	1/0	a0001	472	263	74	32	129	5	22	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/1	a0002	472	161	11	38	77	13	21	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	a0003	472	11	11	0	0	0	0	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	a0004	472	1	0	0	1	0	0	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	a0005	472	1	0	0	1	0	0	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	a0006	472	1	0	0	0	0	1	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	a0007	472	1	0	0	1	0	0	copy fasta	ULK3	chr15	74831118	74848156
ULK3_chr15_74831118_74848156	0/0	a0008	472	1	0	0	1	0	0	copy fasta	ULK3	chr15	74831118	74848156
ULK4_chr3_41241599_41967103	0/1	a0001	1275	27	12	10	1	0	3	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	a0002	1275	6	3	1	0	1	1	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	a0003	1275	6	5	1	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	a0004	1275	6	5	1	0	0	0	copy fasta	ULK4	chr3	41241599	41967103