JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ULK4_chr3_41241599_41967103	0/0	a0005	1275	4	4	0	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	a0006	1275	3	1	1	1	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	a0007	1275	3	0	1	1	0	1	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	a0008	1275	2	2	0	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	a0009	1275	2	2	0	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	a0010	1275	2	2	0	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	a0011	1275	1	1	0	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	a0012	1275	1	1	0	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	a0013	1275	1	0	0	1	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	1/0	a0014	1275	1	0	0	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	a0015	1275	1	1	0	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	a0016	1275	1	0	0	0	0	1	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	a0017	1275	1	1	0	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	a0018	1275	1	0	1	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	a0019	1275	1	0	1	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	a0020	1275	1	0	0	0	1	0	copy fasta	ULK4	chr3	41241599	41967103
ULK4_chr3_41241599_41967103	0/0	a0021	1275	1	0	1	0	0	0	copy fasta	ULK4	chr3	41241599	41967103
UMAD1_chr7_7635752_7884223	1/1	a0001	137	247	82	51	75	6	31	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	a0002	137	2	0	1	0	0	1	copy fasta	UMAD1	chr7	7635752	7884223
UMAD1_chr7_7635752_7884223	0/0	a0003	137	1	0	0	1	0	0	copy fasta	UMAD1	chr7	7635752	7884223
UMODL1_chr21_42066317_42147996	0/0	a0001	1318	51	5	14	21	2	9	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	1/0	a0002	1318	35	9	10	13	0	2	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0003	1318	18	3	0	10	0	5	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/1	a0004	1318	18	2	6	8	0	1	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0005	1318	12	0	5	6	0	1	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0006	1318	10	0	1	9	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0007	1318	9	0	1	6	1	1	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0008	1318	8	0	0	8	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0009	1318	8	0	0	8	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0010	1318	7	1	5	0	1	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0011	1318	7	0	2	4	0	1	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0012	1318	7	5	0	0	1	1	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0013	1318	6	5	0	0	0	1	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0014	1318	6	0	1	0	2	3	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0015	1318	5	0	1	4	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0016	1318	5	0	2	1	1	1	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0017	1318	5	3	0	0	1	1	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0018	1318	5	2	2	1	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0019	1318	5	0	0	5	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0020	1318	5	0	1	4	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0021	1318	4	3	0	1	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0022	1318	4	0	0	3	0	1	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0023	1318	4	3	1	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0024	1318	4	4	0	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0025	1318	4	3	1	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0026	1318	4	2	2	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0027	1318	4	0	2	2	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0028	1086	4	0	0	4	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0029	1318	3	0	0	3	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	a0030	1318	3	1	2	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996