JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UMOD_chr16_20328051_20357715	0/0	a0003	640	3	3	0	0	0	0	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	0/0	a0004	640	2	0	0	0	0	2	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	0/0	a0005	640	2	0	0	1	0	1	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	0/0	a0006	640	2	1	1	0	0	0	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	0/0	a0007	640	1	0	0	1	0	0	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	0/0	a0008	640	1	0	0	0	0	1	copy fasta	UMOD	chr16	20328051	20357715
UMPS_chr3_124725452_124754273	1/1	a0001	480	325	71	57	145	15	35	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	a0002	480	89	21	16	44	3	5	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	a0003	480	18	0	1	13	0	4	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	a0004	480	1	0	1	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	a0005	480	1	0	1	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UNC119B_chr12_120705458_120728640	1/1	a0001	251	398	98	68	172	18	40	copy fasta	UNC119B	chr12	120705458	120728640
UNC119_chr17_28541708_28557624	1/1	a0001	240	381	92	74	157	14	42	copy fasta	UNC119	chr17	28541708	28557624
UNC119_chr17_28541708_28557624	0/0	a0002	240	2	2	0	0	0	0	copy fasta	UNC119	chr17	28541708	28557624
UNC119_chr17_28541708_28557624	0/0	a0003	240	1	0	0	1	0	0	copy fasta	UNC119	chr17	28541708	28557624
UNC119_chr17_28541708_28557624	0/0	a0004	240	1	0	0	1	0	0	copy fasta	UNC119	chr17	28541708	28557624
UNC119_chr17_28541708_28557624	0/0	a0005	240	1	0	0	1	0	0	copy fasta	UNC119	chr17	28541708	28557624
UNC13A_chr19_17596336_17693354	0/1	a0001	1703	252	79	44	93	6	29	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	a0002	1703	52	12	16	5	9	10	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	a0003	1703	6	0	6	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	a0004	1703	3	0	2	0	1	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	a0005	1703	2	0	0	0	0	2	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	a0006	1703	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	a0007	1703	1	0	0	1	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	1/0	a0008	1703	1	0	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	a0009	1703	1	0	0	1	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	a0010	1703	1	0	0	0	0	1	copy fasta	UNC13A	chr19	17596336	17693354
UNC13B_chr9_35157009_35410335	1/0	a0001	4340	64	22	7	28	2	4	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0002	4340	44	12	7	17	1	7	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0003	4340	38	0	2	28	2	6	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0004	4340	16	8	5	1	1	1	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0005	4340	12	11	1	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0006	4340	8	5	1	2	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0007	4340	6	6	0	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0008	4340	4	1	2	0	1	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0009	4340	3	0	0	0	0	3	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0010	4340	2	0	2	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0011	4340	2	0	0	0	1	1	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0012	4340	2	0	0	2	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/1	a0013	4340	2	0	1	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0014	4340	2	0	0	0	0	2	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0015	4340	1	1	0	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0016	4340	1	0	0	0	0	1	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0017	4340	1	0	0	0	0	1	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0018	4340	1	0	0	0	0	1	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0019	4340	1	1	0	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0020	4340	1	0	0	1	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0021	4340	1	1	0	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0022	4340	1	0	0	1	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0023	4340	1	1	0	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335