JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UNC13B_chr9_35157009_35410335	0/0	a0024	4340	1	0	0	1	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0025	4340	1	1	0	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0026	4340	1	1	0	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0027	4340	1	0	0	1	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0028	4340	1	0	0	1	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0029	4340	1	0	1	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0030	4340	1	1	0	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0031	4340	1	0	0	1	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0032	4340	1	0	1	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	a0033	4340	1	0	0	0	0	1	copy fasta	UNC13B	chr9	35157009	35410335
UNC13C_chr15_53973441_54633605	0/1	a0001	2214	124	56	24	27	6	10	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	a0002	2214	11	0	6	5	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	1/0	a0003	2214	5	4	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	a0004	2214	3	0	0	0	0	3	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	a0005	2214	3	0	0	3	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	a0006	2214	2	2	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	a0007	2214	2	2	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	a0008	2214	1	0	0	0	0	1	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	a0009	2214	1	0	1	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	a0010	2214	1	0	1	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	a0011	2214	1	1	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	a0012	2214	1	0	0	1	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	a0013	2214	1	1	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	a0014	2214	1	1	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	a0015	2214	1	1	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13D_chr17_75822225_75849404	0/0	a0001	1090	196	68	19	84	7	18	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	1/1	a0002	1090	178	12	48	90	8	18	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	a0003	1090	6	6	0	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	a0004	1090	5	5	0	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	a0005	1090	4	1	2	0	0	1	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	a0006	1090	3	3	0	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	a0007	1090	2	0	0	0	0	2	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	a0008	1090	2	0	0	2	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	a0009	1090	1	1	0	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	a0010	1090	1	0	1	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	a0011	1090	1	0	0	1	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	a0012	1090	1	0	0	1	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	a0013	1090	1	0	1	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	a0014	1090	1	0	0	0	1	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	a0015	1090	1	1	0	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	a0016	1090	1	0	0	1	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	a0017	1090	1	0	0	1	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	a0018	1090	1	0	1	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	a0019	1090	1	0	1	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	a0020	1090	1	0	1	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	a0021	1090	1	1	0	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	a0022	1090	1	0	0	0	0	1	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	a0023	1090	1	0	0	1	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	a0024	1090	1	0	0	1	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC45A_chr15_90930285_90959093	1/1	a0001	944	341	71	62	146	16	44	copy fasta	UNC45A	chr15	90930285	90959093