JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BRCA2_chr13_32310508_32405268	0/0	a0003	3418	40	3	6	22	1	8	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0004	3418	17	9	6	2	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	1/0	a0005	3418	9	7	1	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0006	3418	7	0	6	0	0	1	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0007	3418	7	0	0	7	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0008	3418	4	0	4	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0009	3418	3	0	0	3	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0010	3418	3	3	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0011	3418	2	0	0	2	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0012	3418	2	1	1	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0013	3418	2	0	2	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0014	3418	2	1	1	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0015	3418	2	2	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0016	3418	2	0	0	2	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0017	3418	1	0	0	0	0	1	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0018	3418	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0019	3418	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0020	3418	1	1	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0021	3418	1	0	1	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0022	3418	1	1	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0023	3418	1	1	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0024	3418	1	0	1	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0025	3418	1	1	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0026	3418	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0027	3418	1	0	1	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0028	3418	1	0	0	0	0	1	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0029	3418	1	1	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0030	3418	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0031	3418	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0032	3418	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0033	3418	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0034	3418	1	0	0	0	0	1	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0035	3418	1	1	0	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0036	3418	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0037	3418	1	0	0	1	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCA2_chr13_32310508_32405268	0/0	a0038	3418	1	0	1	0	0	0	copy fasta	BRCA2	chr13	32310508	32405268
BRCC3_chrX_155066508_155128077	0/0	a0000	0	1	0	0	1	0	0	copy fasta	BRCC3	chrX	155066508	155128077
BRCC3_chrX_155066508_155128077	1/1	a0001	291	253	70	44	102	9	26	copy fasta	BRCC3	chrX	155066508	155128077
BRD1_chr22_49768283_49832873	1/1	a0001	1189	229	70	32	91	8	26	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	a0002	1189	22	10	3	0	4	5	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	a0003	1189	3	3	0	0	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	a0004	1189	1	1	0	0	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	a0005	1189	1	0	0	1	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	a0006	1189	1	0	1	0	0	0	copy fasta	BRD1	chr22	49768283	49832873
BRD1_chr22_49768283_49832873	0/0	a0007	1189	1	0	0	0	0	1	copy fasta	BRD1	chr22	49768283	49832873
BRD2_chr6_32963594_32986501	0/1	a0001	801	438	85	76	221	18	37	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	a0002	800	9	1	2	1	0	5	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	a0003	750	6	3	0	3	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	a0004	801	4	4	0	0	0	0	copy fasta	BRD2	chr6	32963594	32986501
BRD2_chr6_32963594_32986501	0/0	a0005	801	3	0	2	1	0	0	copy fasta	BRD2	chr6	32963594	32986501