JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UNC45A_chr15_90930285_90959093	0/0	a0002	944	24	13	4	7	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	a0003	944	9	8	1	0	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	a0004	944	6	0	0	6	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	a0005	944	5	0	5	0	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	a0006	944	3	3	0	0	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	a0007	944	1	0	1	0	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	a0008	944	1	0	1	0	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	a0009	944	1	0	0	1	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	a0010	944	1	0	0	0	0	1	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	a0011	944	1	0	0	0	0	1	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	a0012	944	1	0	0	0	0	1	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	a0013	944	1	0	0	0	0	1	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	a0014	944	1	1	0	0	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45B_chr17_35142817_35194343	1/1	a0001	929	364	76	58	186	9	33	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	a0002	929	23	2	11	7	1	2	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	a0003	929	9	1	0	4	0	4	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	a0004	929	7	7	0	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	a0005	929	7	0	3	0	2	2	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	a0006	929	3	3	0	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	a0007	929	3	3	0	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	a0008	929	2	0	0	0	0	2	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	a0009	929	2	2	0	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	a0010	929	2	0	0	0	0	2	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	a0011	929	2	0	0	2	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	a0012	929	2	0	0	1	0	1	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	a0013	929	1	0	0	1	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	a0014	929	1	0	1	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	a0015	929	1	0	1	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	a0016	929	1	1	0	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	a0017	929	1	0	1	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	a0018	929	1	0	1	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	a0019	929	1	1	0	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	a0020	929	1	0	0	1	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC50_chr2_98603589_98623515	1/1	a0001	259	414	84	84	188	12	44	copy fasta	UNC50	chr2	98603589	98623515
UNC5A_chr5_176805559_176885898	1/1	a0001	842	249	81	52	72	8	34	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	a0002	842	9	4	2	3	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	a0003	842	7	5	2	0	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	a0004	842	2	2	0	0	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	a0005	842	1	0	0	1	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5B_chr10_71207570_71307864	1/1	a0001	945	297	64	49	140	10	32	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0002	945	20	0	4	12	0	4	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0003	945	8	7	1	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0004	945	6	2	1	0	2	1	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0005	945	3	3	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0006	945	3	3	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0007	945	2	2	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0008	945	2	2	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0009	944	2	0	0	2	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0010	942	2	0	2	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0011	934	2	2	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864