JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UNC5B_chr10_71207570_71307864	0/0	a0012	945	2	0	0	2	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0013	945	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0014	945	1	0	1	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0015	945	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0016	945	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0017	945	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0018	934	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0019	945	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0020	945	1	0	1	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0021	945	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0022	886	1	0	0	0	0	1	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0023	847	1	0	1	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0024	935	1	0	1	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0025	944	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0026	945	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0027	945	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0028	945	1	0	1	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0029	945	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0030	945	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	a0031	945	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5CL_chr6_41021895_41044221	1/0	a0001	518	339	85	57	156	7	33	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/1	a0002	518	24	3	5	10	1	4	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	a0003	518	5	0	2	0	2	1	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	a0004	518	3	3	0	0	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	a0005	518	2	2	0	0	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	a0006	518	2	2	0	0	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	a0007	518	2	0	0	1	0	1	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	a0008	518	2	0	2	0	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	a0009	518	1	0	0	0	0	1	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	a0010	518	1	0	0	1	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	a0011	518	1	0	0	1	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	a0012	518	1	1	0	0	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	a0013	518	1	0	0	1	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5C_chr4_95157504_95553973	0/0	a0001	931	107	60	9	23	2	13	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	a0002	931	85	5	27	39	5	9	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	a0003	931	4	0	0	4	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	a0004	931	2	0	2	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	a0005	931	1	0	0	0	0	1	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	a0006	931	1	1	0	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	a0007	931	1	0	0	0	1	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	a0008	931	1	0	0	0	0	1	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	a0009	931	1	0	0	0	0	1	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	a0010	931	1	0	0	0	0	1	copy fasta	UNC5C	chr4	95157504	95553973
UNC5D_chr8_35230475_35801540	0/0	a0001	953	61	40	4	10	0	7	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	a0002	953	2	2	0	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	a0003	953	1	0	0	0	0	1	copy fasta	UNC5D	chr8	35230475	35801540
UNC79_chr14_93425939_93712876	0/1	a0001	2707	112	60	15	20	4	12	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	a0002	2707	42	5	10	18	5	4	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	a0003	2707	20	9	6	1	3	1	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	a0004	2707	4	0	0	3	0	1	copy fasta	UNC79	chr14	93425939	93712876