JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UNC79_chr14_93425939_93712876	0/0	a0005	2707	4	0	4	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	a0006	2707	3	3	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	a0007	2707	2	0	0	2	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	a0008	2707	1	1	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	a0009	2707	1	1	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	a0010	2707	1	0	0	0	0	1	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	a0011	2707	1	1	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	a0012	2707	1	0	1	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	a0013	2707	1	0	0	0	0	1	copy fasta	UNC79	chr14	93425939	93712876
UNC80_chr2_209766832_210004296	1/1	a0001	3324	162	51	36	43	10	20	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	a0002	3324	8	7	1	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	a0003	3324	2	2	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	a0004	3324	2	0	0	2	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	a0005	3324	2	2	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	a0006	3324	2	2	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	a0007	3324	1	0	1	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	a0008	3324	1	0	0	1	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	a0009	3324	1	0	1	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	a0010	3324	1	0	0	0	0	1	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	a0011	3324	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	a0012	3324	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	a0013	3324	1	0	0	0	0	1	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	a0014	3324	1	0	1	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	a0015	3324	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	a0016	3324	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC93A_chr6_167286315_167321014	0/0	a0001	457	138	28	17	73	7	13	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	1/1	a0002	457	88	4	28	42	5	7	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0003	457	74	16	12	28	2	16	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0004	150	54	6	8	32	1	7	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0005	457	14	0	0	14	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0006	457	14	8	4	0	1	1	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0007	457	13	0	3	10	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0008	457	12	10	2	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0009	457	8	8	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0010	457	5	0	5	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0011	457	4	0	0	0	0	4	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0012	457	4	4	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0013	457	3	3	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0014	457	2	2	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0015	457	2	0	0	0	2	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0016	457	1	0	0	1	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0017	457	1	1	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0018	457	1	1	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0019	457	1	1	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0020	457	1	1	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0021	457	1	1	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0022	457	1	0	0	1	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0023	457	1	0	0	1	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0024	457	1	0	1	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0025	457	1	0	0	1	0	0	copy fasta	UNC93A	chr6	167286315	167321014