JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UNC93A_chr6_167286315_167321014	0/0	a0026	457	1	0	0	1	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0027	457	1	1	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	a0028	457	1	1	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93B1_chr11_67986100_68009097	1/1	a0001	597	364	89	67	160	15	31	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	a0002	597	4	2	1	0	1	0	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	a0003	597	1	0	0	0	0	1	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	a0004	597	1	1	0	0	0	0	copy fasta	UNC93B1	chr11	67986100	68009097
UNCX_chr7_1227872_1242326	0/0	a0000	0	12	1	2	9	0	0	copy fasta	UNCX	chr7	1227872	1242326
UNCX_chr7_1227872_1242326	1/1	a0001	531	387	93	71	171	12	38	copy fasta	UNCX	chr7	1227872	1242326
UNCX_chr7_1227872_1242326	0/0	a0002	531	3	0	2	1	0	0	copy fasta	UNCX	chr7	1227872	1242326
UNCX_chr7_1227872_1242326	0/0	a0003	531	3	2	1	0	0	0	copy fasta	UNCX	chr7	1227872	1242326
UNCX_chr7_1227872_1242326	0/0	a0004	531	1	0	0	1	0	0	copy fasta	UNCX	chr7	1227872	1242326
UNG_chr12_109092597_109115992	1/1	a0001	313	451	93	70	226	14	46	copy fasta	UNG	chr12	109092597	109115992
UNG_chr12_109092597_109115992	0/0	a0002	313	1	1	0	0	0	0	copy fasta	UNG	chr12	109092597	109115992
UNKL_chr16_1358205_1419704	1/1	a0001	733	237	67	48	89	8	23	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	a0002	245	62	20	11	20	5	6	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	a0003	733	10	2	2	0	1	5	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	a0004	733	3	0	2	0	1	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	a0005	733	1	0	1	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	a0006	733	1	0	0	0	0	1	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	a0007	733	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	a0008	733	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	a0009	733	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	a0010	733	1	0	0	0	1	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	a0011	737	1	0	0	0	0	1	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	a0012	737	1	0	0	0	0	1	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	a0013	733	1	0	0	1	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	a0014	733	1	0	0	0	0	1	copy fasta	UNKL	chr16	1358205	1419704
UNK_chr17_75779806_75830799	1/1	a0001	810	351	88	58	164	12	27	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	a0002	810	1	1	0	0	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	a0003	810	1	1	0	0	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	a0004	810	1	0	0	1	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	a0005	810	1	0	0	1	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	a0006	810	1	0	0	0	0	1	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	a0007	810	1	0	0	1	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	a0008	810	1	0	0	1	0	0	copy fasta	UNK	chr17	75779806	75830799
UPB1_chr22_24490332_24533390	1/1	a0001	384	344	88	58	140	16	40	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	a0002	384	2	0	2	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	a0003	384	2	2	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	a0004	384	1	0	0	1	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	a0005	384	1	0	1	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	a0006	384	1	0	0	1	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	a0007	384	1	0	1	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPF1_chr19_18826959_18873230	1/1	a0001	1118	393	88	55	186	14	48	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	a0002	1118	1	0	1	0	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF2_chr10_11915022_12047809	1/1	a0001	1272	321	86	54	148	7	24	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	a0002	1272	11	0	4	0	3	4	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	a0003	1272	1	0	0	1	0	0	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	a0004	1272	1	0	0	1	0	0	copy fasta	UPF2	chr10	11915022	12047809
UPF3A_chr13_114276601_114310817	1/1	a0001	476	299	26	58	173	14	26	copy fasta	UPF3A	chr13	114276601	114310817