JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
UPF3A_chr13_114276601_114310817	0/0	a0002	476	102	50	18	18	0	16	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	a0003	476	23	1	1	17	0	4	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	a0004	476	11	8	3	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	a0005	475	2	0	0	2	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	a0006	476	2	2	0	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	a0007	476	2	2	0	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	a0008	476	1	0	1	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	a0009	475	1	0	0	1	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	a0010	476	1	0	0	1	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	a0011	476	1	1	0	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	a0012	476	1	1	0	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	a0013	476	1	0	0	1	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	a0014	476	1	0	1	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	a0015	476	1	1	0	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	a0016	476	1	0	0	1	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3B_chrX_119829022_119857963	1/1	a0001	483	280	73	49	113	13	30	copy fasta	UPF3B	chrX	119829022	119857963
UPF3B_chrX_119829022_119857963	0/0	a0002	483	1	1	0	0	0	0	copy fasta	UPF3B	chrX	119829022	119857963
UPF3B_chrX_119829022_119857963	0/0	a0003	155	1	0	0	1	0	0	copy fasta	UPF3B	chrX	119829022	119857963
UPK1A_chr19_35661517_35683481	0/1	a0001	258	152	41	33	62	1	14	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	1/0	a0002	258	130	18	31	59	7	14	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	a0003	258	75	6	8	55	2	4	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	a0004	258	52	28	2	5	3	14	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	a0005	258	5	0	0	5	0	0	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	a0006	258	1	0	1	0	0	0	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	a0007	258	1	1	0	0	0	0	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	a0008	258	1	0	0	0	0	1	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	a0009	258	1	0	0	0	1	0	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	a0010	258	1	0	1	0	0	0	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	a0011	258	1	0	0	0	0	1	copy fasta	UPK1A	chr19	35661517	35683481
UPK1B_chr3_119168598_119210143	0/1	a0001	260	340	81	62	155	12	29	copy fasta	UPK1B	chr3	119168598	119210143
UPK1B_chr3_119168598_119210143	1/0	a0002	260	52	14	12	22	0	3	copy fasta	UPK1B	chr3	119168598	119210143
UPK1B_chr3_119168598_119210143	0/0	a0003	260	26	0	0	26	0	0	copy fasta	UPK1B	chr3	119168598	119210143
UPK1B_chr3_119168598_119210143	0/0	a0004	260	3	3	0	0	0	0	copy fasta	UPK1B	chr3	119168598	119210143
UPK1B_chr3_119168598_119210143	0/0	a0005	260	1	0	0	1	0	0	copy fasta	UPK1B	chr3	119168598	119210143
UPK2_chr11_118951298_118963559	1/1	a0001	184	383	81	72	176	12	40	copy fasta	UPK2	chr11	118951298	118963559
UPK2_chr11_118951298_118963559	0/0	a0002	184	11	9	2	0	0	0	copy fasta	UPK2	chr11	118951298	118963559
UPK2_chr11_118951298_118963559	0/0	a0003	184	3	0	0	3	0	0	copy fasta	UPK2	chr11	118951298	118963559
UPK2_chr11_118951298_118963559	0/0	a0004	184	1	0	0	1	0	0	copy fasta	UPK2	chr11	118951298	118963559
UPK3A_chr22_45279949_45300874	0/1	a0001	287	335	72	65	151	11	35	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	1/0	a0002	287	89	13	13	48	3	11	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	a0003	287	7	7	0	0	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	a0004	181	4	0	0	4	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	a0005	287	3	0	0	3	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	a0006	287	1	0	0	1	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	a0007	287	1	1	0	0	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	a0008	287	1	0	0	1	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	a0009	181	1	0	0	1	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	a0010	287	1	1	0	0	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	a0011	287	1	0	0	1	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3BL1_chr7_102632025_102647791	0/0	a0001	263	104	14	26	58	1	5	copy fasta	UPK3BL1	chr7	102632025	102647791